RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1002570", tax_clade = "Sar" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1002570 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28929265 28929265 PRJNA1002570_P_NODE_41308_length_244_cov_2.368421_g41113_i0 PRJNA1002570 41308 244 2.368421 5.77894724 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 52.4 5.11e-6   NR KRX02435.1 266149 g41113 i0 57.5 2.13934426229508 40 17 49.2 0 107 226 113 152 KRX02435.1 hypothetical protein PPERSA_10052 [Pseudocohnilembus persalinus] diamond 522 52.4 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
31551623 31551623 PRJNA1002570_P_NODE_26936_length_275_cov_1.480198_g26741_i0 PRJNA1002570 26936 275 1.480198 4.0705445 Stentor coeruleus 5963 SAR_Eukaryotes SAR_Eukaryotes 55.5 1.83e-6   NR OMJ92383.1 5963 g26741 i0 47.3 0.6 55 29 60 0 258 94 397 451 OMJ92383.1 hypothetical protein SteCoe_4824 [Stentor coeruleus] diamond 165 55.5 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Stentoridae Stentor Stentor coeruleus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;