RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1002570", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1002570 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12906096 12906096 PRJNA1002570_P_NODE_29511_length_268_cov_2.733333_g29316_i0 PRJNA1002570 29511 268 2.733333 7.32533244 Proschkinia sp. SZCZR1824 2588390 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.025   NTclustered gi|1681061561|gb|MH800316.1| 2588390 g29316 i0 92.105 0.141791044776119 38 1 14 2 212 249 24512 24477 Proschkinia sp. SZCZR1824 mitochondrion, complete genome blastn 38 52.8 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Proschkiniaceae Proschkinia Proschkinia sp. SZCZR1824
27666453 27666453 PRJNA1002570_P_NODE_33064_length_259_cov_1.623656_g32869_i0 PRJNA1002570 33064 259 1.623656 4.20526904 Seminavis robusta 568900 SAR_Eukaryotes SAR_Eukaryotes 43.1 0.0345   NR CAB9500332.1 568900 g32869 i0 37.9 0.671814671814672 58 31 61.4 1 100 258 1185 1242 CAB9500332.1 expressed unknown protein [Seminavis robusta] diamond 174 43.1 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta
28195434 28195434 PRJNA1002570_P_NODE_20546_length_289_cov_1.648148_g20351_i0 PRJNA1002570 20546 289 1.648148 4.76314772 root 1 Root_unresolved Root_unresolved 62 2.29e-9   NR YP_010139028.1 59812 g20351 i0 68.4 7.40138408304498 38 12 39.4 0 115 2 87 124 YP_010139028.1 NADH dehydrogenase subunit 3 [Lithodesmium undulatum] diamond 2139 62.4 0.993589743589744 Eukaryota Sar   Bacillariophyta Mediophyceae Lithodesmiales Lithodesmiaceae Lithodesmium Lithodesmium undulatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;