RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1002570" and tax_clade = "SAR202 cluster"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • SAR202 cluster · 3 ✖

bioproject 1

  • PRJNA1002570 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26686124 26686124 PRJNA1002570_P_NODE_7241_length_417_cov_1.790698_g7047_i0 PRJNA1002570 7241 417 1.790698 7.46721066 SAR202 cluster bacterium 2030829 Bacteria Bacteria 49.7 1.28e-4   NR MQF98088.1 2030829 g7047 i0 34.7 0.683453237410072 95 51 66.2 3 33 308 25 111 MQF98088.1 hypothetical protein [SAR202 cluster bacterium] diamond 285 49.7 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium
30508347 30508347 PRJNA1002570_P_NODE_10053_length_367_cov_2.547619_g9858_i0 PRJNA1002570 10053 367 2.547619 9.34976173 SAR202 cluster bacterium 2030829 Bacteria Bacteria 160 7.14e-44   NR MQF98304.1 2030829 g9858 i0 63.1 1.99455040871935 122 45 99.7 0 2 367 168 289 MQF98304.1 aldehyde dehydrogenase family protein [SAR202 cluster bacterium] diamond 732 160 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium
31424820 31424820 PRJNA1002570_P_NODE_4096_length_533_cov_1.321739_g3902_i0 PRJNA1002570 4096 533 1.321739 7.04486887 SAR202 cluster bacterium 2030829 Bacteria Bacteria 119 1.57e-27   NR MQF98490.1 2030829 g3902 i0 44.4 0.861163227016886 153 77 85 4 5 457 587 733 MQF98490.1 recombinase [SAR202 cluster bacterium] diamond 459 119 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;