RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1002570", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1002570 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26805405 26805405 PRJNA1002570_P_NODE_9261_length_379_cov_2.026144_g9066_i0 PRJNA1002570 9261 379 2.026144 7.67908576 PVC group 1783257 Bacteria Bacteria 136 3.28e-36   NR MFA4943116.1 2053569 g9066 i0 53.7 11.6437994722955 121 56 95.8 0 1 363 176 296 MFA4943116.1 SDR family oxidoreductase [Lentisphaeria bacterium] diamond 4413 137 0.992700729927007 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
29276410 29276410 PRJNA1002570_P_NODE_40369_length_246_cov_0.890173_g40174_i0 PRJNA1002570 40369 246 0.890173 2.18982558 Lentisphaerae bacterium GWF2_5 1932692 Bacteria Bacteria 47.4 3.46e-4   NR OGV53835.1 1798574 g40174 i0 50.9 0.646341463414634 53 26 64.6 0 161 3 6 58 OGV53835.1 MAG: hypothetical protein A2X45_08565 [Lentisphaerae bacterium GWF2_50_93] diamond 159 47.4 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium GWF2_50_93

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;