RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1002570", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1002570 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7378309 7378309 PRJNA1002570_P_NODE_39786_length_246_cov_1.739884_g39591_i0 PRJNA1002570 39786 246 1.739884 4.28011464 Salinibacter 146918 Bacteria Bacteria 54.7 0.006   NTclustered gi|1419235469|gb|CP030716.1| 146919 g39591 i0 100 1.21544715447154 29 0 12 0 218 246 1382637 1382609 Salinibacter ruber strain P13 chromosome, complete genome blastn 299 54.7 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinibacter Salinibacter ruber
28416764 28416764 PRJNA1002570_P_NODE_15286_length_310_cov_3.670886_g15091_i0 PRJNA1002570 15286 310 3.670886 11.3797466 Pseudomonadati 3379134 Bacteria Bacteria 44.7 0.0177   NR WP_105011609.1 1923971 g15091 i0 54.8 1.48064516129032 42 17 40.6 1 184 309 825 864 WP_105011609.1 glycoside hydrolase family 3 N-terminal domain-containing protein [Salinibacter sp. 10B] diamond 459 45.1 0.991130820399113 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinibacter Salinibacter sp. 10B
30761215 30761215 PRJNA1002570_P_NODE_30934_length_265_cov_1.317708_g30739_i0 PRJNA1002570 30934 265 1.317708 3.4919262 Rhodothermales bacterium 2306054 Bacteria Bacteria 90.5 7.83e-19   NR MFQ5571023.1 2306054 g30739 i0 52.8 3 89 39 99.6 2 2 265 246 332 MFQ5571023.1 PAS domain S-box protein [Rhodothermales bacterium] diamond 795 90.5 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;