RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1002570" and tax_clade = "Acidobacteriota subdivision 22"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Acidobacteriota subdivision 22 · 1 ✖

bioproject 1

  • PRJNA1002570 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2275799 2275799 PRJNA1002570_P_NODE_25022_length_279_cov_2.203883_g24827_i0 PRJNA1002570 25022 279 2.203883 6.14883357 Pseudomonadati 3379134 Bacteria Bacteria 130 1.15e-25   NTclustered gi|1037405666|gb|CP011806.1| 1660251 g24827 i0 83.333 1.66666666666667 144 20 51 4 2 143 4004380 4004239 Acidobacteria bacterium Mor1 chromosome blastn 465 130 1 Bacteria Acidobacteriota subdivision 22 Pseudomonadati Acidobacteriota         Acidobacteria bacterium Mor1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;