RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA1001940" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1001940 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16724250 16724250 PRJNA1001940_S_NODE_28154_length_387_cov_4.575581_g27105_i0 PRJNA1001940 28154 387 4.575581 17.70749847 Acidobacteriaceae bacterium ZG23-2 2883246 Bacteria Bacteria 704 0   NTclustered gi|2221425918|gb|CP085323.1| 2883246 g27105 i0 99.483 90.6330749354005 387 2 100 0 1 387 1429177 1428791 Acidobacteriaceae bacterium ZG23-2 chromosome, complete genome blastn 35075 704 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   Acidobacteriaceae bacterium ZG23-2
17998075 17998075 PRJNA1001940_S_NODE_15495_length_475_cov_4.782407_g14468_i0 PRJNA1001940 15495 475 4.782407 22.71643325 Terriglobus roseus 392734 Bacteria Bacteria 837 0   NTclustered gi|1085637902|emb|LT629690.1| 392734 g14468 i0 98.526 114.151578947368 475 6 100 1 1 475 4808693 4808220 Terriglobus roseus strain GAS232 genome assembly, chromosome: I blastn 54222 837 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terriglobus Terriglobus roseus
23097921 23097921 PRJNA1001940_S_NODE_11539_length_522_cov_3.223382_g10562_i0 PRJNA1001940 11539 522 3.223382 16.82605404 Acidobacteriaceae bacterium ZG23-2 2883246 Bacteria Bacteria 843 0   NTclustered gi|2221425918|gb|CP085323.1| 2883246 g10562 i0 97.189 90.7011494252874 498 14 95 0 1 498 1430051 1430548 Acidobacteriaceae bacterium ZG23-2 chromosome, complete genome blastn 47346 843 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   Acidobacteriaceae bacterium ZG23-2
30128843 30128843 PRJNA1001940_S_NODE_188572_length_158_cov_1.252174_g187518_i0 PRJNA1001940 188572 158 1.252174 1.97843492 Terriglobales bacterium 2282142 Bacteria Bacteria 41.2 0.0411   NR HSS98571.1 2282142 g187518 i0 46.5 0.816455696202532 43 23 81.6 0 144 16 216 258 HSS98571.1 cytochrome c oxidase subunit II [Terriglobales bacterium] diamond 129 41.2 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales     Terriglobales bacterium
32469050 32469050 PRJNA1001940_S_NODE_85879_length_234_cov_3.104712_g84825_i0 PRJNA1001940 85879 234 3.104712 7.26502608 Terriglobia bacterium 2081523 Bacteria Bacteria 42.4 0.0463   NR HET9179585.1 2081523 g84825 i0 46.5 0.551282051282051 43 23 55.1 0 150 22 391 433 HET9179585.1 thioredoxin domain-containing protein [Terriglobia bacterium] diamond 129 42.4 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia       Terriglobia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;