RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1001940", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

  • Metazoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1001940 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5248847 5248847 PRJNA1001940_S_NODE_134285_length_187_cov_2.000000_g133231_i0 PRJNA1001940 134285 187 2 3.74 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.016   NTclustered gi|1557394408|emb|LR031564.1| 45931 g133231 i0 100 0.149732620320856 28 0 15 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
7800036 7800036 PRJNA1001940_S_NODE_37407_length_347_cov_1.421053_g36353_i0 PRJNA1001940 37407 347 1.421053 4.93105391 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.033   NTclustered gi|1557394408|emb|LR031564.1| 45931 g36353 i0 100 0.0806916426512968 28 0 8 0 320 347 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
10351103 10351103 PRJNA1001940_S_NODE_67609_length_264_cov_2.357466_g66555_i0 PRJNA1001940 67609 264 2.357466 6.22371024 Caenorhabditis briggsae 6238 Nematoda Nematoda 52.8 0.024   NTclustered gi|11094977|gb|AC084527.1|CBRG21F09 6238 g66555 i0 100 0.106060606060606 28 0 11 0 37 64 32126 32099 Caenorhabditis briggsae cosmid G21F09, complete sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
11624713 11624713 PRJNA1001940_S_NODE_140270_length_183_cov_2.057143_g139216_i0 PRJNA1001940 140270 183 2.057143 3.76457169 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.016   NTclustered gi|1557394408|emb|LR031564.1| 45931 g139216 i0 100 0.153005464480874 28 0 15 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;