RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1001940", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 5 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 5 ✖

bioproject 1

  • PRJNA1001940 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1421729 1421729 PRJNA1001940_S_NODE_198742_length_153_cov_3.281818_g197688_i0 PRJNA1001940 198742 153 3.281818 5.02118154 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.003   NTclustered gi|2912987826|dbj|AP039592.1| 145626 g197688 i0 96.97 0.215686274509804 33 0 21 1 52 83 67113759 67113727 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 11, sequence blastn 33 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
2697723 2697723 PRJNA1001940_S_NODE_43683_length_324_cov_2.227758_g42629_i0 PRJNA1001940 43683 324 2.227758 7.21793592 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.03   NTclustered gi|2913000417|dbj|AP039607.1| 145626 g42629 i0 100 0.0864197530864197 28 0 9 0 226 253 8953149 8953122 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 26, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
5250618 5250618 PRJNA1001940_S_NODE_58365_length_284_cov_1.593361_g57311_i0 PRJNA1001940 58365 284 1.593361 4.52514524 Haliotis cracherodii 6455 Mollusca Mollusca 56.5 0.002   NTclustered gi|2911866300|ref|XM_071257779.1| 6455 g57311 i0 97.059 0.119718309859155 34 0 12 1 195 228 2757 2789 PREDICTED: Haliotis cracherodii ras-related and estrogen-regulated growth inhibitor-like (LOC139474684), mRNA blastn 34 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis cracherodii
15448727 15448727 PRJNA1001940_S_NODE_132813_length_188_cov_1.986207_g131759_i0 PRJNA1001940 132813 188 1.986207 3.73406916 Ostrea edulis 37623 Mollusca Mollusca 73.1 1.24e-8   NTclustered gi|2507338539|ref|XM_056142050.1| 37623 g131759 i0 89.474 0.909574468085106 57 6 30 0 3 59 1281 1337 PREDICTED: Ostrea edulis casein kinase II subunit alpha-like (LOC130047351), transcript variant X2, mRNA blastn 171 73.1 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Ostrea Ostrea edulis
16722848 16722848 PRJNA1001940_S_NODE_129794_length_190_cov_3.115646_g128740_i0 PRJNA1001940 129794 190 3.115646 5.9197274 Bradybaena similaris 145626 Mollusca Mollusca 111 2.66e-20   NTclustered gi|2912999222|dbj|AP039605.1| 145626 g128740 i0 81.955 2.11578947368421 133 22 69 1 23 153 1828842 1828974 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 24, sequence blastn 402 111 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;