RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1001940", tax_clade = "Opisthokonta" and tax_phylum = "Cnidaria"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA1001940 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6525921 6525921 PRJNA1001940_S_NODE_49286_length_307_cov_3.814394_g48232_i0 PRJNA1001940 49286 307 3.814394 11.71018958 Pocillopora verrucosa 203993 Cnidaria other_Eukaryota 52.8 0.029   NTclustered gi|2751558701|ref|XM_059109354.2| 203993 g48232 i0 100 0.182410423452769 28 0 9 0 226 253 4701 4674 PREDICTED: Pocillopora verrucosa tubulin polyglutamylase TTLL5 (LOC131791997), transcript variant X1, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Pocilloporidae Pocillopora Pocillopora verrucosa
12901266 12901266 PRJNA1001940_S_NODE_48411_length_310_cov_1.438202_g47357_i0 PRJNA1001940 48411 310 1.438202 4.4584262 Henneguya salminicola 69463 Cnidaria other_Eukaryota 58.4 6.22e-4   NTclustered gi|2663986575|emb|OY756916.1| 69463 g47357 i0 88 9.85161290322581 50 4 16 2 262 310 4822 4774 Henneguya salminicola isolate Hz1 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA complete sequences blastn 3054 58.4 1 Eukaryota Opisthokonta Metazoa Cnidaria Myxozoa Bivalvulida Myxobolidae Henneguya Henneguya salminicola
32721211 32721211 PRJNA1001940_S_NODE_47180_length_313_cov_3.092593_g46126_i0 PRJNA1001940 47180 313 3.092593 9.67981609 Montipora capricornis 246305 Cnidaria other_Eukaryota 46.6 0.00379   NR XP_068750066.1 246305 g46126 i0 85.7 0.402555910543131 21 3 20.1 0 143 205 709 729 XP_068750066.1 probable ATP-dependent RNA helicase DDX43 isoform X1 [Montipora capricornis] diamond 126 46.6 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Acroporidae Montipora Montipora capricornis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;