RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1001940", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1001940 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1422919 1422919 PRJNA1001940_S_NODE_86522_length_233_cov_4.168421_g85468_i0 PRJNA1001940 86522 233 4.168421 9.71242093 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 318 1.86e-82   NTclustered gi|2874253728|emb|OY969570.1| 412054 g85468 i0 92.377 142.103004291845 223 17 96 0 2 224 2956913 2957135 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 33110 318 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
17998185 17998185 PRJNA1001940_S_NODE_162695_length_170_cov_1.889764_g161641_i0 PRJNA1001940 162695 170 1.889764 3.2125988 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 143 8.2e-30   NTclustered gi|2874253978|emb|OY970303.1| 412054 g161641 i0 82.184 13.0705882352941 174 23 100 6 1 170 5916764 5916933 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 2222 143 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
28739764 28739764 PRJNA1001940_S_NODE_154047_length_175_cov_1.454545_g152993_i0 PRJNA1001940 154047 175 1.454545 2.54545375 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 44.3 0.00432   NR HYL29474.1 2448054 g152993 i0 45.7 0.788571428571429 46 22 78.9 1 11 148 146 188 HYL29474.1 formimidoylglutamate deiminase [Gemmatimonadales bacterium] diamond 138 44.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;