RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1001940" and tax_clade = "Bacteria candidate phyla"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA1001940 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15027405 15027405 PRJNA1001940_S_NODE_35972_length_352_cov_4.000000_g34918_i0 PRJNA1001940 35972 352 4 14.08 Candidatus Nanosynbacter 2093823 Bacteria Bacteria 621 2.02e-173   NTclustered gi|1842065531|gb|CP040002.1| 713059 g34918 i0 98.58 115.8125 352 3 100 2 1 352 152538 152189 Candidatus Saccharibacteria bacterium oral taxon 488 strain AC002 chromosome, complete genome blastn 40766 621 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium oral taxon 488
27192269 27192269 PRJNA1001940_S_NODE_52942_length_297_cov_3.590551_g51888_i0 PRJNA1001940 52942 297 3.590551 10.66393647 Candidatus Saccharimonadaceae bacterium 2830836 Bacteria Bacteria 102 1.85e-25   NR MEE0888441.1 2830836 g51888 i0 51.1 0.929292929292929 92 41 92.9 1 292 17 50 137 MEE0888441.1 hypothetical protein [Candidatus Saccharimonadaceae bacterium] diamond 276 102 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae   Candidatus Saccharimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;