RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1001940" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA1001940 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9927541 9927541 PRJNA1001940_S_NODE_35608_length_354_cov_1.607717_g34554_i0 PRJNA1001940 35608 354 1.607717 5.69131818 Stemonitidae 137615 Evosea other_Eukaryota 152 3.21e-32   NTclustered gi|2616764720|gb|OR769489.1| 410605 g34554 i0 75.9 18.1723163841808 361 52 98 32 3 348 276 616 Comatricha nigra voucher LE285120 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 6433 152 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Comatricha Comatricha nigra
27950444 27950444 PRJNA1001940_S_NODE_70885_length_258_cov_2.009302_g69831_i0 PRJNA1001940 70885 258 2.009302 5.18399916 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 65.1 3.4e-11   NR XP_004336493.1 1257118 g69831 i0 40.5 0.976744186046512 84 45 97.7 1 255 4 39 117 XP_004336493.1 mitochondrial ribosomal protein l51 / s25 / cib8 domain containing protein [Acanthamoeba castellanii str. Neff] diamond 252 65.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;