RNAquarium Metadata Server
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contig_metadata

15 rows where bioproject = "PRJNA1000943" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 15 ✖

tax_clade 1

bioproject 1

  • PRJNA1000943 · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3971488 3971488 PRJNA1000943_P_NODE_7524_length_300_cov_1.325991_g7386_i0 PRJNA1000943 7524 300 1.325991 3.977973 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 486 6.459999999999999e-133   NTclustered gi|421976355|gb|JQ519494.1| 5778 g7386 i0 95.987 0.996666666666667 299 12 99 0 2 300 517 219 Vermamoeba vermiformis clone JG10.150_g4 elongation factor 2 alpha gene, partial cds blastn 299 486 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5247851 5247851 PRJNA1000943_P_NODE_10305_length_261_cov_1.425532_g10167_i0 PRJNA1000943 10305 261 1.425532 3.72063852 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 213 1.03e-50   NTclustered gi|61968712|gb|AY803788.1| 5778 g10167 i0 87.302 2.17241379310345 189 21 72 2 73 261 927 742 Hartmannella vermiformis vacuolar protein sorting protein 35-3 (VPS35-3) gene, partial cds blastn 567 213 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5247987 5247987 PRJNA1000943_P_NODE_7365_length_302_cov_4.244541_g7227_i0 PRJNA1000943 7365 302 4.244541 12.81851382 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 531 2.9599999999999993e-146   NTclustered gi|909719645|gb|KT185625.1| 5778 g7227 i0 98.344 20.450331125827802 302 5 100 0 1 302 7085 6784 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 6176 531 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7797635 7797635 PRJNA1000943_P_NODE_15707_length_238_cov_2.387879_g15569_i0 PRJNA1000943 15707 238 2.387879 5.68315202 Saccamoeba lacustris 704142 Tubulinea other_Eukaryota 120 2.66e-31   NR AFX84551.1 704142 g15569 i0 67.9 0.983193277310924 78 25 98.3 0 236 3 156 233 AFX84551.1 alpha tubulin, partial [Saccamoeba lacustris] diamond 234 120 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba lacustris
10348247 10348247 PRJNA1000943_P_NODE_15169_length_243_cov_0.917647_g15031_i0 PRJNA1000943 15169 243 0.917647 2.22988221 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 377 3.18e-100   NTclustered gi|423292048|gb|JQ519470.1| 5778 g15031 i0 94.65 79.1028806584362 243 13 100 0 1 243 153 395 Vermamoeba vermiformis clone JG10.132_b5 alpha tubulin gene, partial cds blastn 19222 377 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10348307 10348307 PRJNA1000943_P_NODE_5769_length_334_cov_2.835249_g5631_i0 PRJNA1000943 5769 334 2.835249 9.46973166 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 573 5.43e-159   NTclustered gi|300078496|gb|GU001158.1| 5778 g5631 i0 97.605 13.7784431137725 334 8 100 0 1 334 1631 1298 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4602 573 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13752682 13752682 PRJNA1000943_P_NODE_1011_length_741_cov_4.384731_g885_i0 PRJNA1000943 1011 741 4.384731 32.49085671 Vermamoeba 1260114 Tubulinea other_Eukaryota 1321 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g885 i0 98.919 95.9217273954116 740 7 99 1 1 739 4889 5628 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 71078 1321 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17996833 17996833 PRJNA1000943_P_NODE_155_length_1519_cov_5.450899_g125_i0 PRJNA1000943 155 1519 5.450899 82.79915581 Copromyxa protea 931554 Tubulinea other_Eukaryota 771 6.69e-278   NR BAN33737.1 931554 g125 i0 81.7 3.63001974983542 464 79 90.5 1 1516 143 1 464 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 5514 771 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
17996872 17996872 PRJNA1000943_P_NODE_5495_length_342_cov_1.148699_g5357_i0 PRJNA1000943 5495 342 1.148699 3.92855058 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 472 2.09e-128   NTclustered gi|89357437|gb|DQ407656.1| 5778 g5357 i0 91.52 2 342 29 100 0 1 342 69 410 Hartmannella vermiformis chitinase-like protein cluster A mRNA, partial cds blastn 684 472 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20125803 20125803 PRJNA1000943_P_NODE_6836_length_311_cov_3.441176_g6698_i0 PRJNA1000943 6836 311 3.441176 10.70205736 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 558 1.3999999999999997e-154   NTclustered gi|909719645|gb|KT185625.1| 5778 g6698 i0 99.035 58.7942122186495 311 3 100 0 1 311 3879 3569 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 18285 558 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21821957 21821957 PRJNA1000943_P_NODE_13558_length_246_cov_2.763006_g13420_i0 PRJNA1000943 13558 246 2.763006 6.79699476 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 377 3.2300000000000003e-100   NTclustered gi|62910949|gb|AY925001.1| 5778 g13420 i0 94.309 7.36178861788618 246 14 100 0 1 246 394 639 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 1811 377 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
23097355 23097355 PRJNA1000943_P_NODE_6599_length_316_cov_5.687243_g6461_i0 PRJNA1000943 6599 316 5.687243 17.97168788 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 579 1.0999999999999999e-160   NTclustered gi|300078496|gb|GU001158.1| 5778 g6461 i0 99.684 47.7721518987342 316 1 100 0 1 316 3436 3751 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15096 579 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
24371056 24371056 PRJNA1000943_P_NODE_5280_length_348_cov_1.181818_g5142_i0 PRJNA1000943 5280 348 1.181818 4.11272664 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 505 2.1e-138   NTclustered gi|146335208|gb|EF216680.1| 5778 g5142 i0 92.816 1.19827586206897 348 25 100 0 1 348 1138 1485 Hartmannella vermiformis transketolase mRNA, complete cds blastn 417 505 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
29079767 29079767 PRJNA1000943_P_NODE_3308_length_426_cov_1.014164_g3171_i0 PRJNA1000943 3308 426 1.014164 4.32033864 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 105 2.21e-24   NR BAF75060.1 5775 g3171 i0 52 1.50704225352113 102 48 71.1 1 124 426 43 144 BAF75060.1 aquaporin [Amoeba proteus] diamond 642 105 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
30887465 30887465 PRJNA1000943_P_NODE_8014_length_291_cov_2.862385_g7876_i0 PRJNA1000943 8014 291 2.862385 8.32954035 Amoeba proteus 5775 Tubulinea other_Eukaryota 124 2.07e-31   NR AAD37351.1 5775 g7876 i0 65.7 1.93814432989691 99 30 97.9 2 291 7 112 210 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 564 124 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;