RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1000943" and tax_phylum = "Nitrososphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrososphaerota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1000943 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29497482 29497482 PRJNA1000943_P_NODE_2110_length_523_cov_2.024444_g1973_i0 PRJNA1000943 2110 523 2.024444 10.58784212 Nitrosopumilus sp. 2024843 Archaea Archaea 157 4.469999999999999e-43   NR MBA3751066.1 2024843 g1973 i0 49.7 1.0038240917782 175 73 97.5 3 514 5 182 346 MBA3751066.1 hypothetical protein [Nitrosopumilus sp.] diamond 525 157 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus sp.
31361702 31361702 PRJNA1000943_P_NODE_6956_length_309_cov_3.271186_g6818_i0 PRJNA1000943 6956 309 3.271186 10.10796474 Nitrosopumilales archaeon 2026768 Archaea Archaea 59.3 9.59e-8   NR RPJ28534.1 2026768 g6818 i0 37.8 1.61165048543689 90 51 83.5 3 274 17 3 91 RPJ28534.1 MAG: SDR family oxidoreductase [Nitrosopumilales archaeon] diamond 498 59.3 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales     Nitrosopumilales archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;