RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1000943" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1000943 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3549847 3549847 PRJNA1000943_P_NODE_6923_length_310_cov_1.316456_g6785_i0 PRJNA1000943 6923 310 1.316456 4.0810136 Pseudomonadati 3379134 Bacteria Bacteria 431 3.18e-116   NTclustered gi|117550329|gb|DQ903988.1| 199738 g6785 i0 91.693 114.964516129032 313 22 100 3 1 310 62 373 Uncultured Chlamydia sp. clone PRPR10 16S ribosomal RNA gene, partial sequence blastn 35639 435 0.990804597701149 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia uncultured Chlamydia sp.
27950430 27950430 PRJNA1000943_P_NODE_5045_length_354_cov_5.373665_g4908_i0 PRJNA1000943 5045 354 5.373665 19.0227741 Chlamydiales bacterium 2047757 Bacteria Bacteria 111 1.46e-28   NR MCP5470420.1 2047757 g4908 i0 48.7 0.991525423728814 117 60 99.2 0 3 353 1 117 MCP5470420.1 ribosomal protein L24e family protein [Chlamydiales bacterium] diamond 351 111 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
29553034 29553034 PRJNA1000943_P_NODE_4410_length_376_cov_1.204620_g4273_i0 PRJNA1000943 4410 376 1.20462 4.5293712 Bacteria 2 Bacteria Bacteria 202 9.15e-62   NR WP_237559247.1 340071 g4273 i0 75.8 4.9468085106383 124 30 98.9 0 4 375 43 166 WP_237559247.1 PLP-dependent cysteine synthase family protein [Criblamydia sequanensis] diamond 1860 204 0.990196078431373 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Criblamydiaceae Candidatus Criblamydia Candidatus Criblamydia sequanensis
32374030 32374030 PRJNA1000943_P_NODE_4319_length_379_cov_1.529412_g4182_i0 PRJNA1000943 4319 379 1.529412 5.79647148 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 160 1.2499999999999996e-43   NR MBA3239128.1 2052176 g4182 i0 58 0.941952506596306 119 50 94.2 0 366 10 219 337 MBA3239128.1 histidine phosphatase family protein [Parachlamydiaceae bacterium] diamond 357 160 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;