RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1000943" and tax_phylum = "Candidatus Saccharimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1000943 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
145135 145135 PRJNA1000943_P_NODE_13341_length_247_cov_0.896552_g13203_i0 PRJNA1000943 13341 247 0.896552 2.21448344 Candidatus Nanosynbacter sp. HMT-352 2899133 Bacteria Bacteria 435 1.9e-117   NTclustered gi|2218410560|gb|CP089288.1| 2899133 g13203 i0 98.387 7.75303643724696 248 3 100 1 1 247 680382 680629 Candidatus Nanosynbacter sp. HMT-352 strain TM7-037 chromosome blastn 1915 435 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter sp. HMT-352
16722021 16722021 PRJNA1000943_P_NODE_3394_length_421_cov_2.747126_g3257_i0 PRJNA1000943 3394 421 2.747126 11.56540046 Bacteria 2 Bacteria Bacteria 106 4.37e-24   NR OGL31136.1 1802138 g3257 i0 52.6 49.5605700712589 97 33 69.1 1 81 371 304 387 OGL31136.1 MAG: translation elongation factor Tu [Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_12_FULL_41_12] diamond 20865 107 0.990654205607477 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_12_FULL_41_12
29339749 29339749 PRJNA1000943_P_NODE_15569_length_242_cov_0.923077_g15431_i0 PRJNA1000943 15569 242 0.923077 2.23384634 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 143 2.2599999999999996e-41   NR HXI51812.1 2973664 g15431 i0 90 1.98347107438017 80 8 99.2 0 2 241 2 81 HXI51812.1 50S ribosomal protein L6 [Candidatus Saccharimonadales bacterium] diamond 480 143 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;