RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA1000943", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 8 ✖

tax_kingdom 1

  • Pseudomonadati · 8 ✖

bioproject 1

  • PRJNA1000943 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7376734 7376734 PRJNA1000943_P_NODE_446_length_1048_cov_2.583590_g366_i0 PRJNA1000943 446 1048 2.58359 27.0760232 Geotalea 2910589 Bacteria Bacteria 756 0   NTclustered gi|470481994|ref|NR_076507.1| 351604 g366 i0 80.037 197.93034351145 1067 176 100 31 1 1048 1060 12 Geobacter uraniireducens strain Rf4 23S ribosomal RNA gene, complete sequence blastn 207431 756 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geotalea Geotalea uraniireducens
12898857 12898857 PRJNA1000943_P_NODE_4991_length_356_cov_1.498233_g4854_i0 PRJNA1000943 4991 356 1.498233 5.33370948 Desulfolutivibrio sulfoxidireducens 2773299 Bacteria Bacteria 58.4 7.24e-4   NTclustered gi|1863429635|gb|CP045508.1| 2773299 g4854 i0 100 0.688202247191011 31 0 9 0 106 136 3214307 3214337 Desulfolutivibrio sulfoxidireducens strain DSM 107105 chromosome, complete genome blastn 245 58.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfolutivibrio Desulfolutivibrio sulfoxidireducens
27160516 27160516 PRJNA1000943_P_NODE_8942_length_278_cov_1.521951_g8804_i0 PRJNA1000943 8942 278 1.521951 4.23102378 Caldimicrobium thiodismutans 1653476 Bacteria Bacteria 61.2 1.7e-8   NR PMP61646.1 1653476 g8804 i0 37.7 2.7410071942446 77 38 83.1 1 238 8 359 425 PMP61646.1 MAG: threonine synthase [Caldimicrobium thiodismutans] diamond 762 61.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteria Thermodesulfobacteriales Thermodesulfobacteriaceae Caldimicrobium Caldimicrobium thiodismutans
28265918 28265918 PRJNA1000943_P_NODE_5166_length_351_cov_1.676259_g5029_i0 PRJNA1000943 5166 351 1.676259 5.88366909 Desulfobulbales bacterium 3024413 Bacteria Bacteria 68.9 6.03e-11   NR MDX1776637.1 3024413 g5029 i0 51.6 0.547008547008547 64 28 53.8 2 159 347 217 278 MDX1776637.1 hypothetical protein [Desulfobulbales bacterium] diamond 192 68.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales     Desulfobulbales bacterium
28676714 28676714 PRJNA1000943_P_NODE_14087_length_245_cov_0.906977_g13949_i0 PRJNA1000943 14087 245 0.906977 2.22209365 Geobacter sp. 46610 Bacteria Bacteria 90.5 1.26e-19   NR WP_306533654.1 46610 g13949 i0 59.3 0.991836734693878 81 33 99.2 0 2 244 37 117 WP_306533654.1 oxidoreductase [Geobacter sp.] diamond 243 90.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sp.
30027128 30027128 PRJNA1000943_P_NODE_2471_length_486_cov_2.348668_g2334_i0 PRJNA1000943 2471 486 2.348668 11.41452648 root 1 Root_unresolved Root_unresolved 164 8.16e-45   NR WP_011938255.1 351604 g2334 i0 50.3 2.04320987654321 163 72 95.1 4 476 15 52 214 WP_011938255.1 acetyl-CoA hydrolase/transferase C-terminal domain-containing protein [Geotalea uraniireducens] diamond 993 165 0.993939393939394 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geotalea Geotalea uraniireducens
30160522 30160522 PRJNA1000943_P_NODE_3912_length_396_cov_2.210526_g3775_i0 PRJNA1000943 3912 396 2.210526 8.75368296 Candidatus Dadabacteria bacterium 2080303 Bacteria Bacteria 42.7 0.0327   NR NIP30317.1 2080303 g3775 i0 36.7 0.681818181818182 90 52 67.4 3 272 6 8 93 NIP30317.1 tyrosine-type recombinase/integrase [Candidatus Dadabacteria bacterium] diamond 270 42.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Candidatus Dadabacteria       Candidatus Dadabacteria bacterium
30476859 30476859 PRJNA1000943_P_NODE_3713_length_405_cov_1.409639_g3576_i0 PRJNA1000943 3713 405 1.409639 5.70903795 Desulfatibacillum alkenivorans 259354 Bacteria Bacteria 80.9 1.01e-14   NR WP_073475523.1 259354 g3576 i0 39.4 0.807407407407407 109 60 77.8 3 379 65 430 536 WP_073475523.1 thrombospondin type-1 domain-containing protein [Desulfatibacillum alkenivorans] diamond 327 80.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfatibacillaceae Desulfatibacillum Desulfatibacillum alkenivorans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;