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contig_metadata

9 rows where bioproject = "PRJNA1000943" and tax_kingdom = "Methanobacteriati"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA1000943 · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3971371 3971371 PRJNA1000943_P_NODE_11664_length_251_cov_1.752809_g11526_i0 PRJNA1000943 11664 251 1.752809 4.39955059 Methanosarcina acetivorans 2214 Archaea Archaea 52.8 0.023   NTclustered gi|19918815|gb|AE010299.1| 188937 g11526 i0 100 0.111553784860558 28 0 11 0 130 157 4478367 4478394 Methanosarcina acetivorans str. C2A, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina acetivorans
10348220 10348220 PRJNA1000943_P_NODE_13349_length_247_cov_0.896552_g13211_i0 PRJNA1000943 13349 247 0.896552 2.21448344 Haloglomus salinum 2962673 Archaea Archaea 52.8 0.022   NTclustered gi|2273560668|gb|CP101153.1| 2962673 g13211 i0 100 0.11336032388664 28 0 11 0 42 69 497641 497614 Haloglomus salinum strain ZY58 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Haloglomus Haloglomus salinum
23097248 23097248 PRJNA1000943_P_NODE_1119_length_710_cov_2.938776_g990_i0 PRJNA1000943 1119 710 2.938776 20.8653096 Methanosarcinales archaeon 2250255 Archaea Archaea 435 1.41e-150   NR RYE83110.1 2250255 g990 i0 93 0.959154929577465 227 16 95.9 0 710 30 190 416 RYE83110.1 MAG: translation elongation factor EF-1 subunit alpha, partial [Methanosarcinales archaeon] diamond 681 435 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales     Methanosarcinales archaeon
26590885 26590885 PRJNA1000943_P_NODE_13761_length_246_cov_0.901734_g13623_i0 PRJNA1000943 13761 246 0.901734 2.21826564 Thermoplasmata archaeon 1906666 Archaea Archaea 46.6 0.00165   NR MCK4757280.1 1906666 g13623 i0 32.9 3.46341463414634 79 47 96.3 1 246 10 86 158 MCK4757280.1 tetratricopeptide repeat protein [Thermoplasmata archaeon] diamond 852 46.6 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
26844736 26844736 PRJNA1000943_P_NODE_3041_length_442_cov_3.639566_g2904_i0 PRJNA1000943 3041 442 3.639566 16.08688172 Methanothrix sp. 90426 Archaea Archaea 60.1 2.77e-7   NR HPJ29788.1 90426 g2904 i0 29.5 0.895927601809955 132 74 77.4 4 428 87 543 673 HPJ29788.1 beta/gamma crystallin-related protein [Methanothrix sp.] diamond 396 60.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
26939276 26939276 PRJNA1000943_P_NODE_9282_length_273_cov_1.560000_g9144_i0 PRJNA1000943 9282 273 1.56 4.2588 Candidatus Methanophagales archaeon 2056316 Archaea Archaea 55.8 1.28e-6   NR RJS74969.1 2056316 g9144 i0 39 1.8021978021978 82 48 89 2 21 263 382 462 RJS74969.1 MAG: PKD domain-containing protein [Candidatus Methanophagales archaeon] diamond 492 55.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Candidatus Methanophagales     Candidatus Methanophagales archaeon
27160510 27160510 PRJNA1000943_P_NODE_15042_length_243_cov_0.917647_g14904_i0 PRJNA1000943 15042 243 0.917647 2.22988221 Haloferax sp. DFSO6 2253 Archaea Archaea 42.4 0.0294   NR WP_410765577.1 3388652 g14904 i0 39.3 0.753086419753086 61 36 75.3 1 61 243 6 65 WP_410765577.1 OsmC family protein [Haloferax sp. DFSO60] diamond 183 42.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax sp. DFSO60
27571478 27571478 PRJNA1000943_P_NODE_12824_length_248_cov_1.542857_g12686_i0 PRJNA1000943 12824 248 1.542857 3.82628536 Candidatus Proteinoplasmatales archaeon SG8-5 1803822 Archaea Archaea 47 0.00106   NR KYK30425.1 1803822 g12686 i0 53.1 1.04032258064516 49 23 59.3 0 248 102 5 53 KYK30425.1 MAG: beta-ketoacyl-ACP reductase [Candidatus Proteinoplasmatales archaeon SG8-5] diamond 258 47 1 Archaea   Methanobacteriati Methanobacteriota   Candidatus Proteinoplasmatales     Candidatus Proteinoplasmatales archaeon SG8-5
28929208 28929208 PRJNA1000943_P_NODE_7928_length_293_cov_1.418182_g7790_i0 PRJNA1000943 7928 293 1.418182 4.15527326 Methanobacteriota archaeon 2026739 Archaea Archaea 66.2 3.61e-10   NR MBD51588.1 2026739 g7790 i0 55 1.84300341296928 60 27 61.4 0 45 224 432 491 MBD51588.1 hypothetical protein [Methanobacteriota archaeon] diamond 540 66.2 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;