RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1000943", tax_kingdom = "Bacillati" and tax_phylum = "Vulcanimicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA1000943 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3971449 3971449 PRJNA1000943_P_NODE_3144_length_436_cov_1.275482_g3007_i0 PRJNA1000943 3144 436 1.275482 5.56110152 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 322 2.91e-83   NTclustered gi|2202949261|emb|OV972893.1| 3107663 g3007 i0 83.102 320.084862385321 361 54 82 7 79 436 5032874 5033230 MAG: Candidatus Eremiobacteraeota bacterium isolate E.malaspinii_MAG_MP1648_PBLIHF genome assembly, chromosome: 1 blastn 139557 322 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
3971509 3971509 PRJNA1000943_P_NODE_904_length_782_cov_5.342736_g783_i0 PRJNA1000943 904 782 5.342736 41.78019552 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 630 7.919999999999998e-176   NTclustered gi|2202949261|emb|OV972893.1| 3107663 g783 i0 81.646 265.117647058824 790 118 99 26 1 777 5031280 5032055 MAG: Candidatus Eremiobacteraeota bacterium isolate E.malaspinii_MAG_MP1648_PBLIHF genome assembly, chromosome: 1 blastn 207322 630 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
27508513 27508513 PRJNA1000943_P_NODE_4083_length_388_cov_2.238095_g3946_i0 PRJNA1000943 4083 388 2.238095 8.6838086 Candidatus Elarobacter sp. 3047550 Bacteria Bacteria 89.4 2.83e-19   NR HEX3469537.1 3047550 g3946 i0 42.9 0.974226804123711 126 62 95.1 6 370 2 67 185 HEX3469537.1 hypothetical protein [Candidatus Elarobacter sp.] diamond 378 89.4 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae Candidatus Elarobacter Candidatus Elarobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;