RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1000943", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA1000943 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16722064 16722064 PRJNA1000943_P_NODE_6814_length_312_cov_1.246862_g6676_i0 PRJNA1000943 6814 312 1.246862 3.89020944 Mycoplasma sp. 2108 Bacteria Bacteria 555 1.8199999999999994e-153   NTclustered gi|2294977822|gb|OP364020.1| 2108 g6676 i0 98.718 160.009615384615 312 4 100 0 1 312 816 505 Mycoplasma sp. strain unknow 16S ribosomal RNA gene, partial sequence blastn 49923 555 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp.
20546367 20546367 PRJNA1000943_P_NODE_9377_length_272_cov_1.422111_g9239_i0 PRJNA1000943 9377 272 1.422111 3.86814192 FCB group 1783270 Bacteria Bacteria 153 7.0199999999999986e-43   NR WP_028126859.1 209274 g9239 i0 78.9 73.4227941176471 90 19 99.3 0 2 271 92 181 WP_028126859.1 elongation factor Tu [Williamsoniiplasma lucivorax] diamond 19971 154 0.993506493506494 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales   Williamsoniiplasma Williamsoniiplasma lucivorax

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;