RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJEB9859" and tax_phylum = "Evosea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB9859 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9072419 9072419 PRJEB9859_P_NODE_5788_length_241_cov_1.047170_g5753_i0 PRJEB9859 5788 241 1.04717 2.5236797 Acytostelium subglobosum LB1 1410327 Evosea other_Eukaryota 116 1.2399999999999998e-31   NR XP_012760150.1 1410327 g5753 i0 76.1 0.83402489626556 67 16 83.4 0 239 39 40 106 XP_012760150.1 hypothetical protein SAMD00019534_038040 [Acytostelium subglobosum LB1] diamond 201 116 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
15447654 15447654 PRJEB9859_P_NODE_3813_length_259_cov_511.808696_g3778_i0 PRJEB9859 3813 259 511.808696 1325.58452264 Phalansterium filosum 857046 Evosea other_Eukaryota 233 7.85e-57   NTclustered gi|300078501|gb|GU001163.1| 857046 g3778 i0 85.586 86.7992277992278 222 32 86 0 15 236 2344 2123 Phalansterium sp. EEG-2010/THA 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 22481 233 1 Eukaryota Amoebozoa   Evosea Variosea     Phalansterium Phalansterium filosum
28076575 28076575 PRJEB9859_P_NODE_6625_length_219_cov_22.600000_g6590_i0 PRJEB9859 6625 219 22.6 49.494 Heterostelium album PN5 2086695 Evosea other_Eukaryota 48.9 1.79e-4   NR XP_020432180.1 670386 g6590 i0 48.6 0.506849315068493 37 19 50.7 0 29 139 379 415 XP_020432180.1 hypothetical protein PPL_06882 [Heterostelium album PN500] diamond 111 48.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;