RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJEB9859" and tax_phylum = "Cercozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 5 ✖

tax_clade 1

bioproject 1

  • PRJEB9859 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2695172 2695172 PRJEB9859_P_NODE_6123_length_232_cov_185.472906_g6088_i0 PRJEB9859 6123 232 185.472906 430.29714192 Cercozoa sp. YPF501 552662 SAR_Eukaryotes SAR_Eukaryotes 213 8.99e-51   NTclustered gi|220983376|dbj|AB453012.1| 552662 g6088 i0 94.853 57.4181034482759 136 7 59 0 94 229 1689 1554 Cercozoa sp. YPF501 gene for nuclear large subunit ribosomal RNA, partial sequence blastn 13321 213 1 Eukaryota Sar   Cercozoa         Cercozoa sp. YPF501
6523247 6523247 PRJEB9859_P_NODE_2886_length_285_cov_142.140625_g2851_i0 PRJEB9859 2886 285 142.140625 405.10078125 Cercozoa sp. YPF501 552662 SAR_Eukaryotes SAR_Eukaryotes 213 1.14e-50   NTclustered gi|220983376|dbj|AB453012.1| 552662 g2851 i0 94.853 46.740350877193 136 7 48 0 147 282 1689 1554 Cercozoa sp. YPF501 gene for nuclear large subunit ribosomal RNA, partial sequence blastn 13321 213 1 Eukaryota Sar   Cercozoa         Cercozoa sp. YPF501
15026874 15026874 PRJEB9859_P_NODE_4952_length_245_cov_203.495370_g4917_i0 PRJEB9859 4952 245 203.49537 498.5636565 Thaumatomastigidae 45098 SAR_Eukaryotes SAR_Eukaryotes 158 4.56e-34   NTclustered gi|88792586|gb|DQ386167.1| 188980 g4917 i0 90.164 79.1795918367347 122 10 49 2 14 134 2004 1884 Thaumatomastix sp. ATCC 50250 28S ribosomal RNA gene, partial sequence blastn 19399 158 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Thaumatomastix Thaumatomastix sp. ATCC 50250
20546066 20546066 PRJEB9859_P_NODE_2977_length_282_cov_151.664032_g2942_i0 PRJEB9859 2977 282 151.664032 427.69257024 Cercozoa sp. YPF501 552662 SAR_Eukaryotes SAR_Eukaryotes 213 1.13e-50   NTclustered gi|220983376|dbj|AB453012.1| 552662 g2942 i0 94.853 47.2375886524823 136 7 48 0 144 279 1689 1554 Cercozoa sp. YPF501 gene for nuclear large subunit ribosomal RNA, partial sequence blastn 13321 213 1 Eukaryota Sar   Cercozoa         Cercozoa sp. YPF501
30382329 30382329 PRJEB9859_P_NODE_1353_length_361_cov_3.045181_g1318_i0 PRJEB9859 1353 361 3.045181 10.99310341 Paulinella chromatophora 39717 SAR_Eukaryotes SAR_Eukaryotes 67.8 2.3e-10   NR BAJ14650.1 39717 g1318 i0 63.8 0.880886426592798 58 19 48.2 1 4 177 386 441 BAJ14650.1 elongation factor 1alpha, partial [Paulinella chromatophora] diamond 318 67.8 1 Eukaryota Sar   Cercozoa Imbricatea Euglyphida Paulinellidae Paulinella Paulinella chromatophora

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;