RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB9859" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJEB9859 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1419616 1419616 PRJEB9859_P_NODE_2402_length_302_cov_1.772894_g2367_i0 PRJEB9859 2402 302 1.772894 5.35413988 Nautilia sp. PV-1 2579250 Bacteria Bacteria 65.8 3.61e-6   NTclustered gi|1551374994|gb|CP026530.1| 2579250 g2367 i0 86.441 0.486754966887417 59 8 20 0 100 158 1605391 1605449 Nautilia sp. PV-1 chromosome, complete genome blastn 147 65.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nautiliaceae Nautilia Nautilia sp. PV-1
1419642 1419642 PRJEB9859_P_NODE_3642_length_263_cov_3.555556_g3607_i0 PRJEB9859 3642 263 3.555556 9.35111228 Campylobacter sp. 19-13652 2840180 Bacteria Bacteria 65.8 3.08e-6   NTclustered gi|2052158881|dbj|AP024713.1| 2840180 g3607 i0 82.667 0.855513307984791 75 11 28 2 27 99 1151708 1151782 Campylobacter sp. 19-13652 DNA, complete genome blastn 225 65.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. 19-13652
15026857 15026857 PRJEB9859_P_NODE_2972_length_282_cov_11246.612648_g2937_i0 PRJEB9859 2972 282 11246.612648 31715.44766736 root 1 Root_unresolved Root_unresolved 69.4 2.58e-7   NTclustered gi|2222028449|gb|CP094103.1| 210 g2937 i0 100 14.709219858156 37 0 13 0 173 209 1292615 1292579 Helicobacter pylori strain Hpfe077 chromosome, complete genome blastn 4148 69.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28424118 28424118 PRJEB9859_P_NODE_4266_length_251_cov_1.000000_g4231_i0 PRJEB9859 4266 251 1 2.51 Campylobacterota bacterium 2026809 Bacteria Bacteria 70.5 6.96e-12   NR RLA72306.1 2026809 g4231 i0 52.8 0.860557768924303 72 31 83.7 2 249 40 6 76 RLA72306.1 MAG: N-6 DNA methylase [Campylobacterota bacterium] diamond 216 70.5 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium
29654956 29654956 PRJEB9859_P_NODE_2710_length_291_cov_1.900763_g2675_i0 PRJEB9859 2710 291 1.900763 5.53122033 Nitratiruptor tergarcus 269259 Bacteria Bacteria 53.9 7.94e-6   NR WP_084274523.1 269259 g2675 i0 67.4 0.443298969072165 43 14 44.3 0 271 143 275 317 WP_084274523.1 RCC1 domain-containing protein [Nitratiruptor tergarcus] diamond 129 53.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nitratiruptoraceae Nitratiruptor Nitratiruptor tergarcus
30319274 30319274 PRJEB9859_P_NODE_5232_length_244_cov_1.032558_g5197_i0 PRJEB9859 5232 244 1.032558 2.51944152 Arcobacter sp. 1872629 Bacteria Bacteria 45.8 0.00152   NR PLY05996.1 1872629 g5197 i0 46.7 0.55327868852459 45 24 55.3 0 3 137 117 161 PLY05996.1 MAG: nucleoside 2-deoxyribosyltransferase [Arcobacter sp.] diamond 135 45.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;