RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB9859" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB9859 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
999051 999051 PRJEB9859_P_NODE_861_length_410_cov_14.375328_g827_i0 PRJEB9859 861 410 14.375328 58.9388448 Bacteriovorax 146784 Bacteria Bacteria 339 2.6999999999999994e-88   NTclustered gi|1700689994|gb|CP030035.1| 960 g827 i0 83.978 192.851219512195 362 48 87 10 55 410 1660305 1660662 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 79069 339 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
6102190 6102190 PRJEB9859_P_NODE_6345_length_227_cov_2.131313_g6310_i0 PRJEB9859 6345 227 2.131313 4.83808051 Peredibacter 263370 Bacteria Bacteria 302 1.82e-77   NTclustered gi|2631252187|gb|CP139487.1| 28202 g6310 i0 91.111 139.47577092511 225 16 98 3 5 227 510906 510684 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 31661 302 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
17996661 17996661 PRJEB9859_P_NODE_4455_length_249_cov_1.009091_g4420_i0 PRJEB9859 4455 249 1.009091 2.51263659 Bdellovibrio sp. 28201 Bacteria Bacteria 126 3.869999999999999e-32   NR MBC7420883.1 28201 g4420 i0 87.3 1.71084337349398 71 9 85.5 0 2 214 233 303 MBC7420883.1 exodeoxyribonuclease VII large subunit [Bdellovibrio sp.] diamond 426 126 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
29718261 29718261 PRJEB9859_P_NODE_7090_length_216_cov_95.807487_g7055_i0 PRJEB9859 7090 216 95.807487 206.94417192 Bdellovibrio sp. qaytius 1916293 Bacteria Bacteria 57 2.39e-8   NR AZZ37269.1 1916293 g7055 i0 70.6 0.472222222222222 34 10 47.2 0 216 115 70 103 AZZ37269.1 hypothetical protein CIK05_10875 [Bdellovibrio sp. qaytius] diamond 102 57 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;