RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB9859" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 6 ✖

tax_clade 1

bioproject 1

  • PRJEB9859 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10347977 10347977 PRJEB9859_P_NODE_1609_length_342_cov_8.041534_g1574_i0 PRJEB9859 1609 342 8.041534 27.50204628 Cryptosporidium ubiquitum 857276 SAR_Eukaryotes SAR_Eukaryotes 108 6.8e-19   NTclustered gi|1624734488|ref|XM_029018197.1| 857276 g1574 i0 87.234 0.274853801169591 94 12 27 0 185 278 427 334 Cryptosporidium ubiquitum 60s ribosomal protein L19 (cubi_01185), partial mRNA blastn 94 108 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium ubiquitum
13752480 13752480 PRJEB9859_P_NODE_5751_length_241_cov_1.047170_g5716_i0 PRJEB9859 5751 241 1.04717 2.5236797 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 67.6 7.75e-7   NTclustered gi|2785766922|ref|XM_067218611.1| 5824 g5716 i0 81.707 0.680497925311203 82 13 34 2 8 88 853 933 Plasmodium brasilianum ATP synthase subunit gamma (MKS88_005356), partial mRNA blastn 164 67.6 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium brasilianum
24370796 24370796 PRJEB9859_P_NODE_2240_length_309_cov_3.310714_g2205_i0 PRJEB9859 2240 309 3.310714 10.23010626 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 174 5.9e-39   NTclustered gi|401402052|ref|XM_003881109.1| 572307 g2205 i0 81.517 29.631067961165 211 39 68 0 1 211 169 379 Neospora caninum Liverpool putative ubiquitin / ribosomal protein CEP52 fusion protein (NCLIV_042000), partial mRNA blastn 9156 174 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
27090271 27090271 PRJEB9859_P_NODE_2222_length_310_cov_1.836299_g2187_i0 PRJEB9859 2222 310 1.836299 5.6925269 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 96.7 6.480000000000001e-21   NR XP_013336055.1 5804 g2187 i0 76.7 7.56774193548387 60 14 58.1 0 305 126 394 453 XP_013336055.1 GTP binding protein, putative [Eimeria maxima] diamond 2346 97.4 0.992813141683778 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria maxima
31930783 31930783 PRJEB9859_P_NODE_1237_length_369_cov_10.017647_g1203_i0 PRJEB9859 1237 369 10.017647 36.96511743 Neospora caninum Liverpool 572307 SAR_Eukaryotes SAR_Eukaryotes 133 1.4e-37   NR XP_003884403.1 572307 g1203 i0 58.1 3.38211382113821 105 44 85.4 0 4 318 11 115 XP_003884403.1 hypothetical protein NCLIV_048030 [Neospora caninum Liverpool] diamond 1248 133 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
32208341 32208341 PRJEB9859_P_NODE_938_length_399_cov_25.413514_g904_i0 PRJEB9859 938 399 25.413514 101.39992086 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 91.3 6.180000000000001e-21   NR CAL7859112.1 1344799 g904 i0 64.9 7.78947368421053 74 26 55.6 0 346 125 25 98 CAL7859112.1 unnamed protein product [Sarcocystis calchasi] diamond 3108 91.3 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Sarcocystis Sarcocystis calchasi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;