RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB9859", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJEB9859 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27981990 27981990 PRJEB9859_P_NODE_6145_length_232_cov_2.330049_g6110_i0 PRJEB9859 6145 232 2.330049 5.40571368 Desulfobulbaceae bacterium 2053307 Bacteria Bacteria 130 2.76e-34   NR MCK9294384.1 2053307 g6110 i0 90.1 0.918103448275862 71 7 91.8 0 19 231 239 309 MCK9294384.1 ATP-binding protein [Desulfobulbaceae bacterium] diamond 213 130 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae   Desulfobulbaceae bacterium
30445259 30445259 PRJEB9859_P_NODE_3413_length_269_cov_1.720833_g3378_i0 PRJEB9859 3413 269 1.720833 4.62904077 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 113 7.289999999999999e-31   NR GJM17324.1 2202153 g3378 i0 76.1 1.58364312267658 71 17 79.2 0 257 45 1 71 GJM17324.1 MAG: hypothetical protein DHS20C13_26510 [Thermodesulfobacteriota bacterium] diamond 426 113 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;