RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB9859", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Peregrinibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Peregrinibacteriota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJEB9859 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19270448 19270448 PRJEB9859_P_NODE_1336_length_362_cov_255.702703_g1301_i0 PRJEB9859 1336 362 255.702703 925.64378486 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 298 3.99e-76   NTclustered gi|2258833497|gb|CP060226.1| 2053688 g1301 i0 88.889 56.5165745856354 252 15 69 8 83 332 813797 814037 MAG: Candidatus Peribacteria bacterium isolate HK-STAS-PATE-10 chromosome, complete genome blastn 20459 298 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium
19270452 19270452 PRJEB9859_P_NODE_1496_length_350_cov_264.825545_g1461_i0 PRJEB9859 1496 350 264.825545 926.8894075 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 298 3.85e-76   NTclustered gi|2258833497|gb|CP060226.1| 2053688 g1461 i0 88.889 58.4542857142857 252 15 71 8 71 320 813797 814037 MAG: Candidatus Peribacteria bacterium isolate HK-STAS-PATE-10 chromosome, complete genome blastn 20459 298 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium
21821774 21821774 PRJEB9859_P_NODE_318_length_561_cov_5.930451_g298_i0 PRJEB9859 318 561 5.930451 33.26983011 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 228 8.559999999999998e-55   NTclustered gi|2258833497|gb|CP060226.1| 2053688 g298 i0 78.32 34.6274509803922 369 69 65 9 32 396 988489 988850 MAG: Candidatus Peribacteria bacterium isolate HK-STAS-PATE-10 chromosome, complete genome blastn 19426 228 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;