RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJEB8827" and tax_phylum = "Thermodesulfobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB8827 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25617617 25617617 PRJEB8827e_S_NODE_3969_length_229_cov_4.190722_g3941_i0 PRJEB8827 3969 229 4.190722 9.5967533800000009 Pseudomonadati 3379134 Bacteria Bacteria 255 1.4500000000000001e-63   NTclustered gi|2893358433|emb|OZ220725.1| 2202153 g3941 i0 90.306 275.951965065502 196 17 85 2 3 197 3131903 3131709 MAG: Thermodesulfobacteriota bacterium isolate be3a28ff-5325-46a4-8e30-90148f7e5e1a genome assembly, chromosome: 1 blastn 63193 255 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
33016773 33016773 PRJEB8827g_S_NODE_204_length_525_cov_3.528571_g188_i0 PRJEB8827 204 525 3.528571 18.52499775 Smithella sp. 2053614 Bacteria Bacteria 58.5 2.71e-7   NR MEN6621308.1 2053614 g188 i0 36.6 1.64 82 52 46.9 0 246 1 13 94 MEN6621308.1 hypothetical protein [Smithella sp.] diamond 861 58.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae Smithella Smithella sp.
33050521 33050521 PRJEB8827e_S_NODE_1069_length_368_cov_6.285285_g1041_i0 PRJEB8827 1069 368 6.285285 23.1298488 Geomonas fuzhouensis 2847989 Bacteria Bacteria 74.3 1.25e-12   NR WP_318248630.1 2873701 g1041 i0 35.6 0.96195652173913 118 73 96.2 1 366 13 143 257 WP_318248630.1 O-antigen polymerase [Geomonas fuzhouensis] diamond 354 74.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomonas Geomonas fuzhouensis
33101780 33101780 PRJEB8827e_S_NODE_26454_length_171_cov_2.985294_g26426_i0 PRJEB8827 26454 171 2.985294 5.10485274 Syntrophales bacterium 2928017 Bacteria Bacteria 75.5 3.65e-14   NR MCK9275947.1 2928017 g26426 i0 63.5 0.912280701754386 52 19 91.2 0 171 16 55 106 MCK9275947.1 glycosyltransferase [Syntrophales bacterium] diamond 156 75.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales     Syntrophales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;