RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB8827", tax_phylum = "Gemmatimonadota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB8827 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26210480 26210480 PRJEB8827f_S_NODE_2190_length_283_cov_46.133065_g2170_i0 PRJEB8827 2190 283 46.133065 130.55657395 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 167 8.94e-37   NTclustered gi|2874254163|emb|OY970395.1| 412054 g2170 i0 80 371.360424028269 245 34 82 10 3 235 1607635 1607876 MAG: uncultured Gemmatimonadales bacterium isolate MFD05684.bin.c.1 genome assembly, chromosome: 1 blastn 105095 167 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
32999540 32999540 PRJEB8827f_S_NODE_22299_length_163_cov_1.867188_g22279_i0 PRJEB8827 22299 163 1.867188 3.04351644 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 42.7 0.00961   NR MBC7674152.1 2026741 g22279 i0 63.2 7.80368098159509 38 12 66.3 1 56 163 3 40 MBC7674152.1 shikimate kinase [Gemmatimonadaceae bacterium] diamond 1272 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
33059930 33059930 PRJEB8827h_S_NODE_2029_length_233_cov_2.222222_g2010_i0 PRJEB8827 2029 233 2.222222 5.17777726 Pseudomonadati 3379134 Bacteria Bacteria 43.5 0.0146   NR HEX2080112.1 2029185 g2010 i0 39.7 3.68240343347639 58 33 72.1 1 3 170 151 208 HEX2080112.1 hypothetical protein [Longimicrobium sp.] diamond 858 43.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;