RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJEB8827", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 9 ✖

tax_kingdom 1

  • Pseudomonadati · 9 ✖

bioproject 1

  • PRJEB8827 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25801807 25801807 PRJEB8827e_S_NODE_3963_length_229_cov_7.592784_g3935_i0 PRJEB8827 3963 229 7.592784 17.38747536 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 235 1.89e-57   NTclustered gi|217038907|gb|EU810998.1| 171953 g3935 i0 87.143 128.013100436681 210 24 91 3 1 208 80 288 Uncultured Acidobacteria bacterium clone 01QCK 23S ribosomal RNA gene, partial sequence blastn 29315 235 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
25937943 25937943 PRJEB8827e_S_NODE_2164_length_281_cov_2.439024_g2136_i0 PRJEB8827 2164 281 2.439024 6.85365744 Acidobacteriota bacterium 1978231 Bacteria Bacteria 327 3.84e-85   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g2136 i0 88.087 208.683274021352 277 32 98 1 6 281 3298437 3298161 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 58640 327 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32913902 32913902 PRJEB8827e_S_NODE_22345_length_176_cov_2.624113_g22317_i0 PRJEB8827 22345 176 2.624113 4.61843888 Candidatus Solibacter sp. 2068625 Bacteria Bacteria 54.3 1.23e-6   NR HEY1496220.1 2068625 g22317 i0 47.4 0.971590909090909 57 30 97.2 0 176 6 298 354 HEY1496220.1 tetratricopeptide repeat protein [Candidatus Solibacter sp.] diamond 171 54.3 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Solibacteraceae Candidatus Solibacter Candidatus Solibacter sp.
32948547 32948547 PRJEB8827i_S_NODE_266_length_315_cov_3.928571_g261_i0 PRJEB8827 266 315 3.928571 12.37499865 Acidobacteriota bacterium 1978231 Bacteria Bacteria 51.2 4.95e-5   NR MEM7351477.1 1978231 g261 i0 45.2 0.59047619047619 62 24 49.5 1 314 159 136 197 MEM7351477.1 hypothetical protein [Acidobacteriota bacterium] diamond 186 51.2 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
33067650 33067650 PRJEB8827e_S_NODE_36429_length_162_cov_1.314961_g36401_i0 PRJEB8827 36429 162 1.314961 2.13023682 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 39.7 0.0414   NR MBP7677414.1 2651171 g36401 i0 45.9 0.685185185185185 37 20 68.5 0 5 115 12 48 MBP7677414.1 hypothetical protein [Thermoanaerobaculia bacterium] diamond 111 39.7 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
33084984 33084984 PRJEB8827h_S_NODE_12662_length_188_cov_2.967320_g12643_i0 PRJEB8827 12662 188 2.96732 5.5785616 Acidobacteriota bacterium 1978231 Bacteria Bacteria 52 9.63e-6   NR MBX3265733.1 1978231 g12643 i0 51.4 1.11702127659574 35 17 55.9 0 184 80 197 231 MBX3265733.1 hypothetical protein [Acidobacteriota bacterium] diamond 210 52 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
33102028 33102028 PRJEB8827g_S_NODE_12374_length_155_cov_4.366667_g12353_i0 PRJEB8827 12374 155 4.366667 6.76833385 Acidobacteriota bacterium 1978231 Bacteria Bacteria 53.9 1.26e-6   NR MDP3717109.1 1978231 g12353 i0 66.7 1.23870967741935 33 11 63.9 0 132 34 4 36 MDP3717109.1 DUF4055 domain-containing protein [Acidobacteriota bacterium] diamond 192 53.9 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
33118805 33118805 PRJEB8827e_S_NODE_27391_length_170_cov_2.481481_g27363_i0 PRJEB8827 27391 170 2.481481 4.2185177 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 94 1.16e-23   NR HEX8287547.1 2283092 g27363 i0 85.7 0.988235294117647 56 8 98.8 0 170 3 4 59 HEX8287547.1 DUF2945 domain-containing protein [Pyrinomonadaceae bacterium] diamond 168 94 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
33170049 33170049 PRJEB8827e_S_NODE_31560_length_166_cov_2.030534_g31532_i0 PRJEB8827 31560 166 2.030534 3.37068644 Acidobacteriota bacterium 1978231 Bacteria Bacteria 73.6 8.76e-14   NR MDQ3180805.1 1978231 g31532 i0 67.3 1.64457831325301 49 16 88.6 0 166 20 241 289 MDQ3180805.1 fatty acid desaturase [Acidobacteriota bacterium] diamond 273 73.6 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;