RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB8827", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB8827 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25666251 25666251 PRJEB8827h_S_NODE_1298_length_268_cov_6.815451_g1279_i0 PRJEB8827 1298 268 6.815451 18.26540868 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 187 6.449999999999998e-43   NTclustered gi|1752383430|ref|XM_030994830.1| 7668 g1279 i0 87.975 54.9029850746269 158 19 59 0 1 158 1303 1460 PREDICTED: Strongylocentrotus purpuratus tubulin alpha-1 chain-like (LOC115928092), mRNA blastn 14714 187 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
26074639 26074639 PRJEB8827h_S_NODE_1437_length_259_cov_7.459821_g1418_i0 PRJEB8827 1437 259 7.459821 19.32093639 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 189 1.7199999999999999e-43   NTclustered gi|1752383407|ref|XM_030994820.1| 7668 g1418 i0 84.656 56.6293436293436 189 29 73 0 1 189 1310 1498 PREDICTED: Strongylocentrotus purpuratus tubulin alpha-1 chain-like (LOC115928089), mRNA blastn 14667 189 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;