RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJEB8827", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 5 ✖

tax_kingdom 1

  • Bacillati · 5 ✖

bioproject 1

  • PRJEB8827 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25530335 25530335 PRJEB8827h_S_NODE_2769_length_217_cov_1074.164835_g2750_i0 PRJEB8827 2769 217 1074.164835 2330.93769195 Mycoplasma sp. (ex Biomphalaria glabrata) 1749074 Bacteria Bacteria 108 4.03e-19   NTclustered gi|971185387|gb|CP013128.1| 1749074 g2750 i0 83.929 31.7834101382488 112 18 52 0 68 179 161311 161422 Mycoplasma sp. (ex Biomphalaria glabrata) isolate Barreiro1 chromosome, complete genome blastn 6897 108 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp. (ex Biomphalaria glabrata)
25665909 25665909 PRJEB8827f_S_NODE_2466_length_271_cov_19.521186_g2446_i0 PRJEB8827 2466 271 19.521186 52.90241406 uncultured Mycoplasmatota bacterium 658143 Bacteria Bacteria 213 1.08e-50   NTclustered gi|2187163482|emb|OV788640.1| 658143 g2446 i0 81.961 416.918819188192 255 43 94 3 17 270 373472 373724 uncultured Tenericutes bacterium isolate min17_bin11 genome assembly, chromosome: 1 blastn 112985 213 1 Bacteria   Bacillati Mycoplasmatota         uncultured Mycoplasmatota bacterium
25666290 25666290 PRJEB8827h_S_NODE_3338_length_211_cov_6.846591_g3319_i0 PRJEB8827 3338 211 6.846591 14.44630701 uncultured Ureaplasma sp. 293430 Bacteria Bacteria 196 8.089999999999999e-46   NTclustered gi|1899225129|gb|MT967601.1| 293430 g3319 i0 83.645 81.436018957346 214 29 100 6 1 211 1954 1744 Uncultured Ureaplasma sp. clone asv_100_2225 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 17183 196 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Ureaplasma uncultured Ureaplasma sp.
26073953 26073953 PRJEB8827e_S_NODE_2589_length_263_cov_13.390351_g2561_i0 PRJEB8827 2589 263 13.390351 35.21662313 uncultured Mycoplasmatota bacterium 658143 Bacteria Bacteria 185 2.2699999999999998e-42   NTclustered gi|2187163482|emb|OV788640.1| 658143 g2561 i0 81.385 341.28897338403 231 39 87 4 18 247 373699 373472 uncultured Tenericutes bacterium isolate min17_bin11 genome assembly, chromosome: 1 blastn 89759 185 1 Bacteria   Bacillati Mycoplasmatota         uncultured Mycoplasmatota bacterium
26346707 26346707 PRJEB8827h_S_NODE_1295_length_268_cov_30.751073_g1276_i0 PRJEB8827 1295 268 30.751073 82.41287564 uncultured Mycoplasmatota bacterium 658143 Bacteria Bacteria 217 8.22e-52   NTclustered gi|2187163482|emb|OV788640.1| 658143 g1276 i0 82.101 437.888059701493 257 43 96 3 6 261 373726 373472 uncultured Tenericutes bacterium isolate min17_bin11 genome assembly, chromosome: 1 blastn 117354 217 1 Bacteria   Bacillati Mycoplasmatota         uncultured Mycoplasmatota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;