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contig_metadata

28 rows where bioproject = "PRJEB8827" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 28 ✖

bioproject 1

  • PRJEB8827 · 28 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25530349 25530349 PRJEB8827h_S_NODE_385_length_396_cov_403.462604_g366_i0 PRJEB8827 385 396 403.462604 1597.71191184 Scenedesmus sp. PABB 2909984 Plants Plants 93.6 6.98e-22   NR KAF8069428.1 2742167 g366 i0 77.8 3.3030303030303 63 14 47.7 0 394 206 37 99 KAF8069428.1 RL36 [Scenedesmus sp. PABB004] diamond 1308 93.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. PABB004
25530356 25530356 PRJEB8827h_S_NODE_4241_length_205_cov_5.141176_g4222_i0 PRJEB8827 4241 205 5.141176 10.5394108 Chlamydomonas incerta 51695 Plants Plants 113 8.1e-21   NTclustered gi|74272608|gb|DQ122869.1| 51695 g4222 i0 84.348 2.40975609756098 115 18 56 0 57 171 631 517 Chlamydomonas incerta 40S ribosomal protein S8 mRNA, complete cds blastn 494 113 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
25617682 25617682 PRJEB8827f_S_NODE_2209_length_283_cov_2.576613_g2189_i0 PRJEB8827 2209 283 2.576613 7.29181479 Trebouxia 13786 Plants Plants 481 2.81e-131   NTclustered gi|94448778|emb|AJ969606.1| 285713 g2189 i0 99.248 94.0318021201413 266 2 94 0 18 283 1346 1081 Uncultured Trebouxia photobiont 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 26S rRNA gene (partial), isolate L-337 blastn 26611 481 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
25617824 25617824 PRJEB8827h_S_NODE_217_length_464_cov_3172.111888_g198_i0 PRJEB8827 217 464 3172.111888 14718.59916032 Eukaryota 2759 Plants Plants 675 0   NTclustered gi|1714003650|gb|MN243923.1| 3079 g198 i0 100 78.5258620689655 365 0 79 0 100 464 872 508 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 36436 675 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
25666045 25666045 PRJEB8827f_S_NODE_5162_length_208_cov_4.635838_g5142_i0 PRJEB8827 5162 208 4.635838 9.64254304 Myrmecia israelensis 3171 Plants Plants 346 7.460000000000001e-91   NTclustered gi|723456786|ref|NC_025525.1| 3171 g5142 i0 100 104.528846153846 187 0 90 0 1 187 2368 2182 Myrmecia israelensis culture-collection UTEX:1181 chloroplast, complete genome blastn 21742 346 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia Myrmecia israelensis
25666312 25666312 PRJEB8827h_S_NODE_42842_length_160_cov_2.144000_g42823_i0 PRJEB8827 42842 160 2.144 3.4304 uncultured Apatococcus 1229086 Plants Plants 219 1.2399999999999999e-52   NTclustered gi|1031961068|gb|KX025109.1| 1229086 g42823 i0 91.25 77.45625 160 14 100 0 1 160 1298 1457 Uncultured Apatococcus clone GOGs_K08 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence blastn 12393 219 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Apatococcus
25753992 25753992 PRJEB8827f_S_NODE_6426_length_197_cov_1.672840_g6406_i0 PRJEB8827 6426 197 1.67284 3.2954948 Chlorophyta 3041 Plants Plants 230 7.339999999999999e-56   NTclustered gi|1518373083|gb|MK201746.1| 152768 g6406 i0 94.631 88.238578680203 149 7 76 1 31 179 999 852 Diplosphaera chodatii strain KZ-26-5 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17383 231 0.995670995670996 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Diplosphaera Diplosphaera chodatii
25754089 25754089 PRJEB8827i_S_NODE_1314_length_204_cov_3.591716_g1309_i0 PRJEB8827 1314 204 3.591716 7.32710064 Eukaryota 2759 Plants Plants 372 1.2e-98   NTclustered gi|1201359271|gb|MF040793.1| 3078 g1309 i0 100 89.3970588235294 201 0 99 0 4 204 199 399 Auxenochlorella pyrenoidosa isolate HITH6 18S ribosomal RNA gene, partial sequence blastn 18237 372 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
25937870 25937870 PRJEB8827d_S_NODE_404_length_286_cov_10.203187_g400_i0 PRJEB8827 404 286 10.203187 29.18111482 Trebouxia sp. A1-2 2608996 Plants Plants 102 2.59e-17   NTclustered gi|1825511251|gb|MN642622.1| 2608996 g400 i0 85.294 2.08741258741259 102 12 36 2 26 127 86129 86227 Trebouxia sp. A1-2 mitochondrion, complete genome blastn 597 102 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. A1-2
25938716 25938716 PRJEB8827h_S_NODE_41396_length_163_cov_1.875000_g41377_i0 PRJEB8827 41396 163 1.875 3.05625 Scenedesmus sp. NREL 46B-D3 2650976 Plants Plants 84.3 3.35e-18   NR KAF6263477.1 2650976 g41377 i0 74.5 0.938650306748466 51 13 93.9 0 158 6 164 214 KAF6263477.1 60S ribosomal protein L7 [Scenedesmus sp. NREL 46B-D3] diamond 153 84.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. NREL 46B-D3
25938763 25938763 PRJEB8827j_S_NODE_116_length_369_cov_1246.221557_g112_i0 PRJEB8827 116 369 1246.221557 4598.55754533 Trebouxia sp. A1-2 2608996 Plants Plants 102 3.43e-17   NTclustered gi|1825511251|gb|MN642622.1| 2608996 g112 i0 85.294 1.61788617886179 102 12 28 2 157 258 86227 86129 Trebouxia sp. A1-2 mitochondrion, complete genome blastn 597 102 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. A1-2
26073824 26073824 PRJEB8827c_S_NODE_389_length_219_cov_1.565217_g376_i0 PRJEB8827 389 219 1.565217 3.42782523 Trebouxia sp. A1-2 2608996 Plants Plants 80.5 8.89e-11   NTclustered gi|1825511251|gb|MN642622.1| 2608996 g376 i0 88.406 1.63926940639269 69 5 32 2 1 69 86162 86227 Trebouxia sp. A1-2 mitochondrion, complete genome blastn 359 80.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. A1-2
26161992 26161992 PRJEB8827d_S_NODE_277_length_322_cov_2.243902_g273_i0 PRJEB8827 277 322 2.243902 7.22536444 Eukaryota 2759 Plants Plants 595 1.1099999999999995e-165   NTclustered gi|1714003650|gb|MN243923.1| 3079 g273 i0 100 99.8167701863354 322 0 100 0 1 322 863 542 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 32141 595 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
26162023 26162023 PRJEB8827e_S_NODE_21621_length_177_cov_3.056338_g21593_i0 PRJEB8827 21621 177 3.0563380000000002 5.40971826 Eukaryota 2759 Plants Plants 327 2.2199999999999996e-85   NTclustered gi|1201359271|gb|MF040793.1| 3078 g21593 i0 100 99.909604519774 177 0 100 0 1 177 867 1043 Auxenochlorella pyrenoidosa isolate HITH6 18S ribosomal RNA gene, partial sequence blastn 17684 327 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
26162262 26162262 PRJEB8827h_S_NODE_53501_length_150_cov_2.956522_g53482_i0 PRJEB8827 53501 150 2.956522 4.434783 root 1 Root_unresolved Root_unresolved 56.5 0.001   NTclustered gi|1808706810|gb|MH511706.1| 33099 g53482 i0 100 5.2 30 0 20 0 1 30 4440 4411 Pandorina morum clone NODE_202 plastid sequence blastn 780 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Pandorina Pandorina morum
26210257 26210257 PRJEB8827e_S_NODE_38702_length_159_cov_7.169355_g38674_i0 PRJEB8827 38702 159 7.169355 11.39927445 Myrmecia israelensis 3171 Plants Plants 294 1.98e-75   NTclustered gi|723456786|ref|NC_025525.1| 3171 g38674 i0 100 109.660377358491 159 0 100 0 1 159 2182 2340 Myrmecia israelensis culture-collection UTEX:1181 chloroplast, complete genome blastn 17436 294 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia Myrmecia israelensis
26433849 26433849 PRJEB8827b_S_NODE_3255_length_220_cov_2.394595_g3203_i0 PRJEB8827 3255 220 2.394595 5.268109 Jaagichlorella 2304164 Plants Plants 313 8.09e-81   NTclustered gi|1802907783|gb|MT006204.1| 2704669 g3203 i0 92.273 100.877272727273 220 17 100 0 1 220 3484 3265 Jaagichlorella nagensis strain FACHB-2415 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 22193 313 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Jaagichlorella Jaagichlorella nagensis
26433878 26433878 PRJEB8827e_S_NODE_1143_length_360_cov_2.360000_g1115_i0 PRJEB8827 1143 360 2.36 8.496 Myrmecia 13617 Plants Plants 547 3.5699999999999986e-151   NTclustered gi|1158556075|emb|LT717549.1| 1938899 g1115 i0 100 79.3888888888889 296 0 82 0 59 354 241 536 Chlorobiont of Psora decipiens partial 26S rRNA gene, isolate Ger1-Swe blastn 28580 547 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       chlorobiont of Psora decipiens
26434101 26434101 PRJEB8827g_S_NODE_399_length_403_cov_1110.524457_g379_i0 PRJEB8827 399 403 1110.524457 4475.41356171 Eukaryota 2759 Plants Plants 612 1.4099999999999996e-170   NTclustered gi|1714003650|gb|MN243923.1| 3079 g379 i0 99.701 82.4913151364764 334 1 83 0 4 337 872 539 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 33244 612 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
26434169 26434169 PRJEB8827j_S_NODE_111_length_374_cov_5.421829_g107_i0 PRJEB8827 111 374 5.421829 20.27764046 Eukaryota 2759 Plants Plants 691 0   NTclustered gi|1714003650|gb|MN243923.1| 3079 g107 i0 100 99.8716577540107 374 0 100 0 1 374 493 866 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 37352 691 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
26482985 26482985 PRJEB8827h_S_NODE_41904_length_162_cov_2.818898_g41885_i0 PRJEB8827 41904 162 2.818898 4.56661476 Pseudochlorella signiensis 173497 Plants Plants 255 9.570000000000001e-64   NTclustered gi|725650714|ref|NC_025529.1| 173497 g41885 i0 95.062 97.2469135802469 162 8 100 0 1 162 150009 150170 Pabia signiensis culture-collection SAG:7.90 chloroplast, complete genome blastn 15754 255 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella signiensis
32914170 32914170 PRJEB8827h_S_NODE_6017_length_199_cov_4.823171_g5998_i0 PRJEB8827 6017 199 4.823171 9.59811029 Bryopsis sp. KO-2 3115439 Plants Plants 41.6 0.0319   NR GMH38167.1 3041901 g5998 i0 37.3 0.889447236180904 59 37 88.9 0 186 10 26 84 GMH38167.1 hypothetical protein BSKO_06051 [Bryopsis sp. KO-2023] diamond 177 41.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis sp. KO-2023
32923267 32923267 PRJEB8827f_S_NODE_1089_length_355_cov_3.571875_g1069_i0 PRJEB8827 1089 355 3.571875 12.68015625 Chlorophyceae 3166 Plants Plants 92 6.64e-19   NR GBF96991.1 307507 g1069 i0 74.1 2.45070422535211 58 15 49 0 353 180 456 513 GBF96991.1 ATP synthase beta mitochondrial precursor [Raphidocelis subcapitata] diamond 870 92.4 0.995670995670996 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Raphidocelis Raphidocelis subcapitata
32931221 32931221 PRJEB8827f_S_NODE_2297_length_279_cov_4.147541_g2277_i0 PRJEB8827 2297 279 4.147541 11.57163939 Pedinophyceae sp. YPF-7 765719 Plants Plants 48.9 3.15e-4   NR CAG9461842.1 765719 g2277 i0 60.6 0.354838709677419 33 13 35.5 0 14 112 225 257 CAG9461842.1 unnamed protein product [Pedinophyceae sp. YPF-701] diamond 99 48.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae       Pedinophyceae sp. YPF-701
32999533 32999533 PRJEB8827f_S_NODE_21075_length_164_cov_2.844961_g21055_i0 PRJEB8827 21075 164 2.844961 4.66573604 Trebouxia sp. A1-2 2608996 Plants Plants 51.6 4.79e-7   NR KAA6429663.1 2608996 g21055 i0 63 1.68292682926829 46 17 84.1 0 26 163 1 46 KAA6429663.1 MAG: hypothetical protein FRX49_00097 [Trebouxia sp. A1-2] diamond 276 51.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. A1-2
33050819 33050819 PRJEB8827h_S_NODE_47085_length_154_cov_1.890756_g47066_i0 PRJEB8827 47085 154 1.890756 2.91176424 Chlorella sorokiniana 3076 Plants Plants 44.7 0.00235   NR PRW56493.1 3076 g47066 i0 76.9 1.28571428571429 26 6 50.6 0 150 73 605 630 PRW56493.1 heat shock 70 [Chlorella sorokiniana] diamond 198 44.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
33084738 33084738 PRJEB8827e_S_NODE_25630_length_172_cov_2.562044_g25602_i0 PRJEB8827 25630 172 2.562044 4.40671568 Helicosporidium sp. ATCC 5 1907511 Plants Plants 69.7 4.45e-12   NR KDD76122.1 1291522 g25602 i0 61.4 8.8953488372093 57 20 99.4 1 171 1 663 717 KDD76122.1 glycosyl hydrolase [Helicosporidium sp. ATCC 50920] diamond 1530 69.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Helicosporidium Helicosporidium sp. ATCC 50920
33136185 33136185 PRJEB8827h_S_NODE_1095_length_285_cov_2.820000_g1076_i0 PRJEB8827 1095 285 2.82 8.037 Chlamydomonas sp. UWO 241 1653778 Plants Plants 96.7 6.99e-22   NR KAG1673219.1 1653778 g1076 i0 66.2 4.12631578947368 65 22 68.4 0 283 89 193 257 KAG1673219.1 hypothetical protein FOA52_013099 [Chlamydomonas sp. UWO 241] diamond 1176 96.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. UWO 241

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;