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contig_metadata

14 rows where bioproject = "PRJEB8827", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 14 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 14 ✖

bioproject 1

  • PRJEB8827 · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15026837 15026837 PRJEB8827_P_NODE_492_length_270_cov_110210.049793_g470_i0 PRJEB8827 492 270 110210.049793 297567.1344411 root 1 Root_unresolved Root_unresolved 58.4 5.32e-4   NTclustered gi|690021421|emb|LM529123.1| 174720 g470 i0 100 12.1074074074074 31 0 11 0 179 209 1684 1714 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0003434 blastn 3269 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
25617808 25617808 PRJEB8827h_S_NODE_1009_length_293_cov_4.813953_g990_i0 PRJEB8827 1009 293 4.813953 14.10488229 Metazoa 33208 Nematoda Nematoda 60.2 1.62e-4   NTclustered gi|1523906|emb|Z79754.1| 6239 g990 i0 85.965 1.09215017064846 57 7 19 1 143 199 35013 34958 Caenorhabditis elegans Cosmid F25H2, complete sequence blastn 320 60.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
25754042 25754042 PRJEB8827h_S_NODE_1074_length_286_cov_4.175299_g1055_i0 PRJEB8827 1074 286 4.175299 11.94135514 Metazoa 33208 Nematoda Nematoda 117 9.24e-22   NTclustered gi|158821894|gb|EU195958.1| 473172 g1055 i0 92.593 27.9475524475524 81 6 28 0 206 286 1892 1972 Protorhabditis sp. JB122 28S ribosomal RNA gene, partial sequence blastn 7993 117 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Protorhabditis Protorhabditis sp. JB122
25938173 25938173 PRJEB8827f_S_NODE_10980_length_179_cov_1.541667_g10960_i0 PRJEB8827 10980 179 1.541667 2.75958393 Pristionchus sp. 14 RS523 3077109 Nematoda Nematoda 104 4.13e-18   NTclustered gi|150984645|gb|EF634984.1| 452808 g10960 i0 80.741 1.37430167597765 135 24 75 2 9 142 106 239 Pristionchus sp. 14 RS5230 small subunit ribosomal protein 27 (rps-27) mRNA, complete cds blastn 246 104 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 14 RS5230
26162252 26162252 PRJEB8827h_S_NODE_42325_length_161_cov_1016.817460_g42306_i0 PRJEB8827 42325 161 1016.81746 1637.0761106 root 1 Root_unresolved Root_unresolved 56.5 0.001   NTclustered gi|2675986210|gb|PP343069.1| 6293 g42306 i0 100 8.22981366459627 30 0 19 0 99 128 933 904 Wuchereria bancrofti isolate Colombia small subunit ribosomal RNA gene, partial sequence blastn 1325 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
26297945 26297945 PRJEB8827f_S_NODE_366_length_487_cov_35.289823_g347_i0 PRJEB8827 366 487 35.289823 171.86143801 Pristionchus 54125 Nematoda Nematoda 117 1.66e-21   NTclustered gi|150982243|gb|EF634710.1| 358043 g347 i0 83.74 3.54004106776181 123 20 25 0 365 487 303 181 Pristionchus sp. 6 RS5101 large subunit ribosomal protein 30 (rpl-30) mRNA, partial cds blastn 1724 117 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 6 RS5101
26345897 26345897 PRJEB8827b_S_NODE_2439_length_231_cov_297.698980_g2387_i0 PRJEB8827 2439 231 297.69898 687.6846438 Strongyloides papillosus 174720 Nematoda Nematoda 58.4 4.44e-4   NTclustered gi|690021421|emb|LM529123.1| 174720 g2387 i0 100 1.11255411255411 31 0 13 0 11 41 1712 1682 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0003434 blastn 257 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
26433920 26433920 PRJEB8827e_S_NODE_3823_length_231_cov_3.382653_g3795_i0 PRJEB8827 3823 231 3.382653 7.81392843 root 1 Root_unresolved Root_unresolved 65.8 2.65e-6   NTclustered gi|690021421|emb|LM529123.1| 174720 g3795 i0 86.667 15.4458874458874 60 6 25 2 1 58 1716 1657 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0003434 blastn 3568 65.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
26569823 26569823 PRJEB8827e_S_NODE_11816_length_189_cov_25.071429_g11788_i0 PRJEB8827 11816 189 25.071429 47.38500081 root 1 Root_unresolved Root_unresolved 62.1 2.69e-5   NTclustered gi|690021421|emb|LM529123.1| 174720 g11788 i0 100 18.4497354497354 33 0 17 0 1 33 1716 1684 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0003434 blastn 3487 62.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
26570034 26570034 PRJEB8827h_S_NODE_30504_length_175_cov_5.714286_g30485_i0 PRJEB8827 30504 175 5.714286 10.0000005 Metazoa 33208 Nematoda Nematoda 108 3.1e-19   NTclustered gi|158821897|gb|EU195961.1| 479135 g30485 i0 78.313 79.5657142857143 166 36 95 0 10 175 2624 2789 Cephaloboides cf. armata SB363 28S ribosomal RNA gene, partial sequence blastn 13924 108 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Cephaloboides Cephaloboides cf. armata SB363
32923284 32923284 PRJEB8827h_S_NODE_27849_length_177_cov_1.408451_g27830_i0 PRJEB8827 27849 177 1.408451 2.49295827 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 70.5 2.16e-13   NR KAK6028982.1 6317 g27830 i0 75 8.25423728813559 44 11 74.6 0 174 43 116 159 KAK6028982.1 ribosomal protein L15 [Ostertagia ostertagi] diamond 1461 71.2 0.990168539325843 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Ostertagia Ostertagia ostertagi
32982459 32982459 PRJEB8827b_S_NODE_5379_length_207_cov_1085.662791_g5327_i0 PRJEB8827 5379 207 1085.662791 2247.32197737 Trichinella pseudospiralis 6337 Nematoda Nematoda 70.9 2.94e-12   NR KRX92917.1 6337 g5327 i0 72.7 0.63768115942029 44 12 63.8 0 204 73 152 195 KRX92917.1 Ubiquitin-60S ribosomal protein L40 [Trichinella pseudospiralis] diamond 132 70.9 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella pseudospiralis
33084987 33084987 PRJEB8827h_S_NODE_21718_length_181_cov_3.952055_g21699_i0 PRJEB8827 21718 181 3.952055 7.15321955 Trichinella pseudospiralis 6337 Nematoda Nematoda 46.6 1.79e-4   NR KRZ34780.1 6337 g21699 i0 60 1.25966850828729 40 16 66.3 0 179 60 75 114 KRZ34780.1 40S ribosomal protein S25 [Trichinella pseudospiralis] diamond 228 46.6 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella pseudospiralis
33084992 33084992 PRJEB8827h_S_NODE_6438_length_198_cov_4.834356_g6419_i0 PRJEB8827 6438 198 4.834356 9.57202488 Pristionchus fissidentatus 1538716 Nematoda Nematoda 53.5 3.11e-7   NR GMT14341.1 1538716 g6419 i0 69.2 3.10606060606061 39 12 59.1 0 179 63 60 98 GMT14341.1 hypothetical protein PFISCL1PPCAC_5638, partial [Pristionchus fissidentatus] diamond 615 53.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;