RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJEB8827", tax_clade = "Haptista" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Eukaryota · 2 ✖

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJEB8827 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25801566 25801566 PRJEB8827b_S_NODE_1003_length_291_cov_13.527344_g951_i0 PRJEB8827 1003 291 13.527344 39.36457104 Meringosphaera mediterranea 2837474 Root_unresolved Root_unresolved 106 2.04e-18   NTclustered gi|2526806211|gb|OR195157.1| 2837474 g951 i0 83.333 28.2817869415808 120 15 41 5 173 291 2939 2824 Meringosphaera mediterranea isolate S7 internal transcribed spacer 2 and large subunit ribosomal RNA gene, partial sequence blastn 8230 106 1 Eukaryota Haptista     Centroplasthelida     Meringosphaera Meringosphaera mediterranea
26482622 26482622 PRJEB8827f_S_NODE_2856_length_257_cov_2.324324_g2836_i0 PRJEB8827 2856 257 2.324324 5.97351268 Emiliania huxleyi CCMP1516 280463 Haptophyta other_Eukaryota 79.3 2.89e-15   NR XP_005762281.1 280463 g2836 i0 71.7 1.68093385214008 46 13 53.7 0 27 164 278 323 XP_005762281.1 hypothetical protein EMIHUDRAFT_358471, partial [Emiliania huxleyi CCMP1516] diamond 432 79.3 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;