RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJEB8827" and tax_clade = "Candidatus Thermofonsia Clade 3"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Candidatus Thermofonsia Clade 3 · 4 ✖

bioproject 1

  • PRJEB8827 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25530273 25530273 PRJEB8827g_S_NODE_7201_length_167_cov_3.325758_g7180_i0 PRJEB8827 7201 167 3.325758 5.55401586 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 126 8.14e-25   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g7180 i0 90.526 129.640718562874 95 9 57 0 21 115 3494682 3494588 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 21650 126 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.
26074654 26074654 PRJEB8827h_S_NODE_2309_length_225_cov_2.847368_g2290_i0 PRJEB8827 2309 225 2.847368 6.406578 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 344 2.95e-90   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g2290 i0 94.248 573.008888888889 226 11 99 2 2 225 3494622 3494397 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 128927 344 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.
26482477 26482477 PRJEB8827f_S_NODE_1224_length_343_cov_3.162338_g1204_i0 PRJEB8827 1224 343 3.162338 10.84681934 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 250 1.07e-61   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g1204 i0 81.27 49.037900874635604 315 54 91 5 17 328 3494588 3494900 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 16820 250 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.
26482950 26482950 PRJEB8827h_S_NODE_208_length_473_cov_11.543379_g189_i0 PRJEB8827 208 473 11.543379 54.60018267 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 318 4.11e-82   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g189 i0 79.393 111.890063424947 461 87 96 8 13 468 3494413 3494870 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 52924 318 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;