RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB8827" and tax_clade = "CRuMs"

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tax_superkingdom 1

tax_clade 1

  • CRuMs · 2 ✖

bioproject 1

  • PRJEB8827 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2695084 2695084 PRJEB8827_P_NODE_2863_length_165_cov_1.205882_g2841_i0 PRJEB8827 2863 165 1.205882 1.9897053 Mantamonas sp. Dar es Salaam 1238683 Root_unresolved Root_unresolved 135 1.33e-27   NTclustered gi|300078495|gb|GU001157.1| 1238683 g2841 i0 95.349 46.7575757575758 86 3 52 1 2 86 2543 2458 Mantomonas sp. Dar es Salaam 28S ribosomal RNA gene, partial sequence blastn 7715 135 1 Eukaryota CRuMs         Mantamonadidae Mantamonas Mantamonas sp. Dar es Salaam
26210679 26210679 PRJEB8827f_S_NODE_6006_length_200_cov_2.721212_g5986_i0 PRJEB8827 6006 200 2.721212 5.442424 Diphylleia rotans 190327 Root_unresolved Root_unresolved 97.1 7.91e-16   NTclustered gi|1200177731|gb|MF039365.1| 190327 g5986 i0 92.537 34.905 67 5 34 0 13 79 4253 4319 Diphylleia rotans isolate D_NIES3764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6981 97.1 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;