RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJEB8827", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 12 ✖

tax_clade 1

  • Amoebozoa · 12 ✖

bioproject 1

  • PRJEB8827 · 12 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25530260 25530260 PRJEB8827g_S_NODE_5441_length_174_cov_5.474820_g5420_i0 PRJEB8827 5441 174 5.47482 9.5261868 Ripella sp. 8 1973050 Discosea other_Eukaryota 189 1.0699999999999999e-43   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g5420 i0 100 62.0287356321839 102 0 59 0 51 152 682 581 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 10793 189 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
25530338 25530338 PRJEB8827h_S_NODE_30497_length_175_cov_11.950000_g30478_i0 PRJEB8827 30497 175 11.95 20.9125 Cochliopodium actinophorum 703021 Discosea other_Eukaryota 296 6.17e-76   NTclustered gi|330902844|gb|JF298248.1| 703021 g30478 i0 100 84.56 160 0 91 0 1 160 442 283 Cochliopodium actinophorum clone 1206 18S ribosomal RNA gene, partial sequence blastn 14798 296 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium actinophorum
25802484 25802484 PRJEB8827h_S_NODE_45467_length_156_cov_11.371901_g45448_i0 PRJEB8827 45467 156 11.371901 17.74016556 Ripella sp. 8 1973050 Discosea other_Eukaryota 250 4.25e-62   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g45448 i0 95.541 101.596153846154 157 6 100 1 1 156 554 398 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 15849 250 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
25802539 25802539 PRJEB8827j_S_NODE_2827_length_174_cov_4.956835_g2823_i0 PRJEB8827 2827 174 4.956835 8.6248929 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 311 2.19e-80   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g2823 i0 98.851 46.367816091954 174 2 100 0 1 174 417 244 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 8068 311 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
26074557 26074557 PRJEB8827g_S_NODE_157_length_607_cov_707.398601_g143_i0 PRJEB8827 157 607 707.398601 4293.90950807 Ripella sp. 8 1973050 Discosea other_Eukaryota 883 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g143 i0 95.365 92.7660626029654 561 17 92 8 49 607 1 554 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 56309 883 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
26074662 26074662 PRJEB8827h_S_NODE_2845_length_216_cov_6.049724_g2826_i0 PRJEB8827 2845 216 6.049724 13.06740384 Ripella decalvata 2047822 Discosea other_Eukaryota 346 7.810000000000001e-91   NTclustered gi|1269228400|gb|MF683525.1| 2047822 g2826 i0 95.833 86.462962962963 216 6 100 3 1 216 392 180 Ripella decalvata clone 23.3.9 18S ribosomal RNA gene, partial sequence blastn 18676 346 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata
26074736 26074736 PRJEB8827j_S_NODE_669_length_222_cov_1.475936_g665_i0 PRJEB8827 669 222 1.475936 3.27657792 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 327 2.92e-85   NTclustered gi|330902855|gb|JF298253.1| 1017091 g665 i0 93.274 11 223 14 100 1 1 222 791 569 Cochliopodium larifeili clone 901 18S ribosomal RNA gene, partial sequence blastn 2442 327 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
26210946 26210946 PRJEB8827h_S_NODE_830_length_313_cov_7.496403_g811_i0 PRJEB8827 830 313 7.496403 23.46374139 Ripella sp. GP2 1217115 Discosea other_Eukaryota 385 2.54e-102   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g811 i0 98.19 65.1182108626198 221 3 71 1 66 286 222 3 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 20382 385 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
26346714 26346714 PRJEB8827h_S_NODE_1703_length_246_cov_2.345972_g1684_i0 PRJEB8827 1703 246 2.345972 5.77109112 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 117 7.77e-22   NTclustered gi|470434524|ref|XM_004338640.1| 1257118 g1684 i0 78.977 13.5 176 34 71 3 66 239 202 28 Acanthamoeba castellanii str. Neff protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic, putative (ACA1_089230), partial mRNA blastn 3321 117 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
26346770 26346770 PRJEB8827h_S_NODE_4727_length_203_cov_1.416667_g4708_i0 PRJEB8827 4727 203 1.416667 2.87583401 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 281 2.07e-71   NTclustered gi|330902855|gb|JF298253.1| 1017091 g4708 i0 91.667 10.8965517241379 204 16 100 1 1 203 606 809 Cochliopodium larifeili clone 901 18S ribosomal RNA gene, partial sequence blastn 2212 281 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
26483043 26483043 PRJEB8827j_S_NODE_232_length_307_cov_5.772059_g228_i0 PRJEB8827 232 307 5.772059 17.72022113 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 363 1.17e-95   NTclustered gi|659103923|gb|KJ569725.1| 1512276 g228 i0 91.698 23.1107491856678 265 17 85 5 1 262 617 879 Cochliopodium kieliense clone 9601 18S ribosomal RNA gene, partial sequence blastn 7095 363 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
26570044 26570044 PRJEB8827h_S_NODE_43240_length_159_cov_5.508065_g43221_i0 PRJEB8827 43240 159 5.508065 8.75782335 Ripella 1217112 Discosea other_Eukaryota 220 3.4099999999999998e-53   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g43221 i0 100 76.6037735849057 119 0 75 0 41 159 682 564 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 12180 220 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;