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contig_metadata

24 rows where bioproject = "PRJEB83711" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 24 ✖

tax_kingdom 1

bioproject 1

  • PRJEB83711 · 24 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
144562 144562 PRJEB83711_P_NODE_69121_length_247_cov_0.896552_g68855_i0 PRJEB83711 69121 247 0.896552 2.21448344 Labilithrix luteola 1391654 Bacteria Bacteria 424 4.1099999999999996e-114   NTclustered gi|913610804|gb|CP012333.1| 1391654 g68855 i0 97.571 141.923076923077 247 6 100 0 1 247 3942662 3942416 Labilithrix luteola strain DSM 27648, complete genome blastn 35055 424 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
2693968 2693968 PRJEB83711_P_NODE_36503_length_300_cov_1.030837_g36237_i0 PRJEB83711 36503 300 1.030837 3.092511 Myxococcus stipitatus 83455 Bacteria Bacteria 331 3.2e-86   NTclustered gi|2722781719|gb|CP102770.1| 83455 g36237 i0 91.057 33.7066666666667 246 20 99 2 55 299 8475741 8475985 Myxococcus stipitatus strain YRE12 chromosome, complete genome blastn 10112 331 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus stipitatus
3549487 3549487 PRJEB83711_P_NODE_74383_length_244_cov_0.912281_g74117_i0 PRJEB83711 74383 244 0.912281 2.22596564 Polyangia bacterium 3058050 Bacteria Bacteria 71.6 2.41e-12   NR MFO0575828.1 3058050 g74117 i0 43.2 0.995901639344262 81 46 99.6 0 243 1 12 92 MFO0575828.1 AAA-like domain-containing protein [Polyangia bacterium] diamond 243 71.6 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
3970236 3970236 PRJEB83711_P_NODE_44324_length_279_cov_1.145631_g44058_i0 PRJEB83711 44324 279 1.145631 3.19631049 Sorangium cellulosum 56 Bacteria Bacteria 91.6 5.45e-14   NTclustered gi|161158851|emb|AM746676.1| 448385 g44058 i0 76.667 1.93906810035842 180 32 63 8 95 269 4987441 4987615 Sorangium cellulosum 'So ce 56' complete genome blastn 541 91.6 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
7797220 7797220 PRJEB83711_P_NODE_78387_length_242_cov_0.923077_g78121_i0 PRJEB83711 78387 242 0.923077 2.23384634 Pendulispora brunnea 2905690 Bacteria Bacteria 246 9.32e-61   NTclustered gi|2698055994|gb|CP089982.1| 2905690 g78121 i0 85.417 369.648760330579 240 32 98 3 1 238 9038215 9037977 Pendulispora brunnea strain MSr12523 chromosome, complete genome blastn 89455 246 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora brunnea
10347749 10347749 PRJEB83711_P_NODE_74849_length_244_cov_0.912281_g74583_i0 PRJEB83711 74849 244 0.912281 2.22596564 Sorangium cellulosum 56 Bacteria Bacteria 58.4 4.73e-4   NTclustered gi|1338588479|gb|CP012673.1| 56 g74583 i0 89.583 0.19672131147541 48 2 20 3 23 70 7085005 7085049 Sorangium cellulosum strain So ce26 chromosome, complete genome blastn 48 58.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
11623264 11623264 PRJEB83711_P_NODE_74890_length_244_cov_0.912281_g74624_i0 PRJEB83711 74890 244 0.912281 2.22596564 Sandaracinus amylolyticus 927083 Bacteria Bacteria 230 9.47e-56   NTclustered gi|2183633570|gb|CP070225.1| 927083 g74624 i0 84.146 97.8606557377049 246 29 99 10 4 244 3641588 3641348 Sandaracinus strain MSr10575 (SBSa001) chromosome, complete sequence blastn 23878 230 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus
15447101 15447101 PRJEB83711_P_NODE_61293_length_251_cov_0.876404_g61027_i0 PRJEB83711 61293 251 0.876404 2.19977404 Archangium gephyra 48 Bacteria Bacteria 291 4.43e-74   NTclustered gi|2809295724|gb|CP102578.1| 48 g61027 i0 87.649 91.1195219123506 251 29 99 2 2 251 4305531 4305780 Archangium gephyra strain SDU49 chromosome, complete genome blastn 22871 291 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium gephyra
18850538 18850538 PRJEB83711_P_NODE_68195_length_247_cov_1.586207_g67929_i0 PRJEB83711 68195 247 1.586207 3.91793129 Myxococcaceae 31 Bacteria Bacteria 407 4.14e-109   NTclustered gi|441484664|gb|CP004025.1| 1278073 g67929 i0 96.356 49.6842105263158 247 9 100 0 1 247 2041026 2040780 Myxococcus stipitatus DSM 14675, complete genome blastn 12272 411 0.990267639902676 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus stipitatus
27097497 27097497 PRJEB83711_P_NODE_70502_length_246_cov_0.901734_g70236_i0 PRJEB83711 70502 246 0.901734 2.21826564 Myxococcales bacterium 2026763 Bacteria Bacteria 64.3 4.75e-10   NR MBN9165273.1 2026763 g70236 i0 90.3 0.378048780487805 31 3 37.8 0 2 94 216 246 MBN9165273.1 HAD-IA family hydrolase [Myxococcales bacterium] diamond 93 64.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27279945 27279945 PRJEB83711_P_NODE_66743_length_248_cov_0.891429_g66477_i0 PRJEB83711 66743 248 0.891429 2.21074392 Anaeromyxobacter 161492 Bacteria Bacteria 79.3 3.53e-16   NR WP_012632676.1 161493 g66477 i0 71.4 3.61693548387097 63 12 71.4 2 246 70 127 187 WP_012632676.1 J domain-containing protein [Anaeromyxobacter dehalogenans] diamond 897 79.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter dehalogenans
28392390 28392390 PRJEB83711_P_NODE_39546_length_290_cov_1.437788_g39280_i0 PRJEB83711 39546 290 1.437788 4.1695852 Polyangiaceae bacterium 2268199 Bacteria Bacteria 108 3.63e-25   NR HTV22624.1 2268199 g39280 i0 63 0.951724137931034 92 34 95.2 0 290 15 1220 1311 HTV22624.1 hypothetical protein [Polyangiaceae bacterium] diamond 276 108 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
28582003 28582003 PRJEB83711_P_NODE_73247_length_245_cov_0.906977_g72981_i0 PRJEB83711 73247 245 0.906977 2.22209365 Myxococcales bacterium 68-2 2026763 Bacteria Bacteria 109 7.99e-26   NR OJY29499.1 1895795 g72981 i0 80 0.73469387755102 60 12 73.5 0 3 182 486 545 OJY29499.1 MAG: hypothetical protein BGO98_47465 [Myxococcales bacterium 68-20] diamond 180 109 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium 68-20
28739737 28739737 PRJEB83711_P_NODE_76107_length_243_cov_1.282353_g75841_i0 PRJEB83711 76107 243 1.282353 3.11611779 Labilithrix sp. 1971228 Bacteria Bacteria 72.8 9.77e-13   NR HSO31499.1 1971228 g75841 i0 58.9 1.38271604938272 56 23 69.1 0 168 1 15 70 HSO31499.1 serine/threonine-protein kinase [Labilithrix sp.] diamond 336 72.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
28865976 28865976 PRJEB83711_P_NODE_77008_length_243_cov_0.917647_g76742_i0 PRJEB83711 77008 243 0.917647 2.22988221 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 42.4 0.0409   NR MBA3501149.1 2026735 g76742 i0 38.8 0.827160493827161 67 40 82.7 1 201 1 106 171 MBA3501149.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 201 42.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29268905 29268905 PRJEB83711_P_NODE_55169_length_257_cov_1.505435_g54903_i0 PRJEB83711 55169 257 1.505435 3.86896795 Minicystis 1649470 Bacteria Bacteria 87.4 6.16e-18   NR APR78285.1 888845 g54903 i0 83 1.09727626459144 47 8 54.9 0 255 115 375 421 APR78285.1 Putative Co/Zn/Cd efflux system membrane fusion protein [Minicystis rosea] diamond 282 88.2 0.99092970521542 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
29686637 29686637 PRJEB83711_P_NODE_67770_length_248_cov_0.891429_g67504_i0 PRJEB83711 67770 248 0.891429 2.21074392 Polyangiales bacterium 3034171 Bacteria Bacteria 110 5.17e-26   NR MFO0645555.1 3034171 g67504 i0 68.3 3.96774193548387 82 26 99.2 0 248 3 294 375 MFO0645555.1 SpoIIE family protein phosphatase [Polyangiales bacterium] diamond 984 110 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
30065826 30065826 PRJEB83711_P_NODE_59972_length_252_cov_0.871508_g59706_i0 PRJEB83711 59972 252 0.871508 2.19620016 Minicystis sp. 1971901 Bacteria Bacteria 100 2.62e-22   NR MFT3772735.1 1971901 g59706 i0 59 4.92857142857143 83 34 98.8 0 251 3 459 541 MFT3772735.1 hypothetical protein [Minicystis sp.] diamond 1242 100 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis sp.
30508304 30508304 PRJEB83711_P_NODE_79193_length_242_cov_0.923077_g78927_i0 PRJEB83711 79193 242 0.923077 2.23384634 Polyangiaceae bacterium 2268199 Bacteria Bacteria 58.9 2.06e-8   NR MBK6515057.1 2268199 g78927 i0 90.9 0.409090909090909 33 3 40.9 0 144 242 1 33 MBK6515057.1 DNA-binding response regulator [Polyangiaceae bacterium] diamond 99 58.9 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
31101072 31101072 PRJEB83711_P_NODE_47555_length_272_cov_1.241206_g47289_i0 PRJEB83711 47555 272 1.241206 3.37608032 Myxococcia 32015 Bacteria Bacteria 102 3.05e-25   NR MBP7681287.1 2026735 g47289 i0 63.2 4.19117647058824 76 28 83.8 0 229 2 1 76 MBP7681287.1 phenylalanine--tRNA ligase subunit beta [Deltaproteobacteria bacterium] diamond 1140 103 0.990291262135922 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31424731 31424731 PRJEB83711_P_NODE_41196_length_286_cov_1.314554_g40930_i0 PRJEB83711 41196 286 1.314554 3.75962444 Polyangiaceae bacterium 2268199 Bacteria Bacteria 109 1.5800000000000002e-27   NR HKQ68454.1 2268199 g40930 i0 76.7 0.765734265734266 73 17 76.6 0 1 219 128 200 HKQ68454.1 SRPBCC family protein [Polyangiaceae bacterium] diamond 219 109 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
32120865 32120865 PRJEB83711_P_NODE_26598_length_346_cov_0.930403_g26332_i0 PRJEB83711 26598 346 0.930403 3.21919438 unclassified Anaeromyxobacter 2620896 Bacteria Bacteria 44.7 0.00967   NR WP_242352140.1 2620896 g26332 i0 33.8 0.589595375722543 68 41 59 2 98 301 50 113 WP_242352140.1 MULTISPECIES: very short patch repair endonuclease [unclassified Anaeromyxobacter] diamond 204 44.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter  
32215728 32215728 PRJEB83711_P_NODE_45078_length_277_cov_1.372549_g44812_i0 PRJEB83711 45078 277 1.372549 3.80196073 Polyangiaceae bacterium 2268199 Bacteria Bacteria 49.7 1.83e-4   NR MDF3066778.1 2268199 g44812 i0 34.4 2.07942238267148 61 40 66.1 0 32 214 227 287 MDF3066778.1 hypothetical protein [Polyangiaceae bacterium] diamond 576 49.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
32721168 32721168 PRJEB83711_P_NODE_66260_length_248_cov_1.720000_g65994_i0 PRJEB83711 66260 248 1.72 4.2656 Myxococcota bacterium 2818507 Bacteria Bacteria 109 5.06e-28   NR MCK6571765.1 2818507 g65994 i0 64.6 0.991935483870968 82 29 99.2 0 246 1 63 144 MCK6571765.1 hypothetical protein [Myxococcota bacterium] diamond 246 109 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;