RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJEB83711" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB83711 · 11 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17576677 17576677 PRJEB83711_P_NODE_61674_length_251_cov_0.876404_g61408_i0 PRJEB83711 61674 251 0.876404 2.19977404 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 166 1.91e-50   NR HJR50383.1 2448054 g61408 i0 100 1.97211155378486 83 0 99.2 0 1 249 25 107 HJR50383.1 GTP cyclohydrolase I FolE [Gemmatimonadales bacterium] diamond 495 166 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
26622729 26622729 PRJEB83711_P_NODE_79501_length_242_cov_0.905325_g79235_i0 PRJEB83711 79501 242 0.905325 2.1908865 Gemmatirosa sp. 2510638 Bacteria Bacteria 90.1 5.46e-20   NR HZF66412.1 2510638 g79235 i0 60.8 1.79752066115702 74 29 91.7 0 21 242 34 107 HZF66412.1 VTT domain-containing protein [Gemmatirosa sp.] diamond 435 90.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa sp.
28961006 28961006 PRJEB83711_P_NODE_72308_length_245_cov_0.906977_g72042_i0 PRJEB83711 72308 245 0.906977 2.22209365 Longimicrobium sp. 2029185 Bacteria Bacteria 89.4 1.36e-19   NR WP_329682107.1 2029185 g72042 i0 68.5 0.893877551020408 73 22 88.2 1 30 245 1 73 WP_329682107.1 YIP1 family protein [Longimicrobium sp.] diamond 219 89.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
29143072 29143072 PRJEB83711_P_NODE_45989_length_275_cov_1.485149_g45723_i0 PRJEB83711 45989 275 1.485149 4.08415975 Bacteria 2 Bacteria Bacteria 99 9.58e-22   NR PYP55479.1 2026742 g45723 i0 55.6 9.80727272727273 90 40 98.2 0 273 4 965 1054 PYP55479.1 MAG: RNA-binding protein [Gemmatimonadota bacterium] diamond 2697 99 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29434021 29434021 PRJEB83711_P_NODE_78370_length_242_cov_0.923077_g78104_i0 PRJEB83711 78370 242 0.923077 2.23384634 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 51.2 4.46e-6   NR MBA3467070.1 2026741 g78104 i0 62.9 1.5495867768595 35 13 43.4 0 137 241 12 46 MBA3467070.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 375 51.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29844778 29844778 PRJEB83711_P_NODE_59171_length_252_cov_1.458101_g58905_i0 PRJEB83711 59171 252 1.458101 3.67441452 Longimicrobium sp. 2029185 Bacteria Bacteria 66.6 1.46e-10   NR HEX2077747.1 2029185 g58905 i0 80 1.29761904761905 40 7 47.6 1 132 251 280 318 HEX2077747.1 molybdopterin-synthase adenylyltransferase MoeB [Longimicrobium sp.] diamond 327 66.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
29939744 29939744 PRJEB83711_P_NODE_47451_length_272_cov_1.467337_g47185_i0 PRJEB83711 47451 272 1.467337 3.99115664 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 43.1 0.0359   NR HXE57716.1 2448054 g47185 i0 37.3 0.738970588235294 67 41 72.8 1 243 46 157 223 HXE57716.1 glycosyltransferase [Gemmatimonadales bacterium] diamond 201 43.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30319257 30319257 PRJEB83711_P_NODE_58732_length_253_cov_0.866667_g58466_i0 PRJEB83711 58732 253 0.866667 2.19266751 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 86.3 2.07e-17   NR HEY0970036.1 2448054 g58466 i0 57.8 0.984189723320158 83 35 98.4 0 5 253 601 683 HEY0970036.1 serine/threonine-protein kinase [Gemmatimonadales bacterium] diamond 249 86.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31417428 31417428 PRJEB83711_P_NODE_69216_length_247_cov_0.896552_g68950_i0 PRJEB83711 69216 247 0.896552 2.21448344 Pseudomonadati 3379134 Bacteria Bacteria 81.6 2.66e-16   NR MSR37127.1 2026742 g68950 i0 70.7 1.36032388663968 58 16 69.2 1 77 247 10 67 MSR37127.1 hypothetical protein [Gemmatimonadota bacterium] diamond 336 82.4 0.990291262135922 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32310890 32310890 PRJEB83711_P_NODE_79539_length_242_cov_0.869822_g79273_i0 PRJEB83711 79539 242 0.869822 2.10496924 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 42.7 0.0346   NR MFI5230487.1 2448054 g79273 i0 37.5 0.694214876033058 56 35 69.4 0 40 207 156 211 MFI5230487.1 ATP-binding protein [Gemmatimonadales bacterium] diamond 168 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32689547 32689547 PRJEB83711_P_NODE_63820_length_250_cov_0.881356_g63554_i0 PRJEB83711 63820 250 0.881356 2.20339 Longimicrobium sp. 2029185 Bacteria Bacteria 171 1.44e-50   NR HEX2209896.1 2029185 g63554 i0 92.8 3.984 83 6 99.6 0 250 2 28 110 HEX2209896.1 hypothetical protein [Longimicrobium sp.] diamond 996 171 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;