RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB83711" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB83711 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13751990 13751990 PRJEB83711_P_NODE_29471_length_330_cov_1.042802_g29205_i0 PRJEB83711 29471 330 1.042802 3.4412466 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 523 5.479999999999998e-144   NTclustered gi|833494855|ref|XM_012915027.1| 5866 g29205 i0 95.181 1239.62121212121 332 14 100 1 1 330 71 402 Babesia bigemina hypothetical protein, conserved partial mRNA blastn 409075 523 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia bigemina
21821382 21821382 PRJEB83711_P_NODE_69338_length_247_cov_0.896552_g69072_i0 PRJEB83711 69338 247 0.896552 2.21448344 Theileria annulata 5874 SAR_Eukaryotes SAR_Eukaryotes 435 1.9e-117   NTclustered gi|84994111|ref|XM_946685.1| 5874 g69072 i0 98.381 1 247 4 100 0 1 247 11654 11900 Theileria annulata uncharacterized protein (TA15945), partial mRNA blastn 247 435 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria annulata
22675505 22675505 PRJEB83711_P_NODE_41278_length_286_cov_1.098592_g41012_i0 PRJEB83711 41278 286 1.098592 3.14197312 Eucoccidiorida 75739 SAR_Eukaryotes SAR_Eukaryotes 523 4.659999999999998e-144   NTclustered gi|47935036|gb|AY613853.1| 280247 g41012 i0 99.65 100.706293706294 286 1 100 0 1 286 67 352 Eimeria arnyi 18S ribosomal RNA gene, partial sequence blastn 28802 523 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria arnyi
23096710 23096710 PRJEB83711_P_NODE_70219_length_246_cov_1.329480_g69953_i0 PRJEB83711 70219 246 1.32948 3.2705208 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 394 3.2e-105   NTclustered gi|820695469|tpe|LN714488.1| 572307 g69953 i0 95.547 45.130081300813 247 10 100 1 1 246 97363 97117 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 11102 394 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;