RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

33 rows where bioproject = "PRJEB83711" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 33 ✖

tax_kingdom 1

bioproject 1

  • PRJEB83711 · 33 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1418733 1418733 PRJEB83711_P_NODE_46502_length_274_cov_1.328358_g46236_i0 PRJEB83711 46502 274 1.328358 3.63970092 Acidobacteriota bacterium 1978231 Bacteria Bacteria 147 5.88e-39   NR NOT46734.1 1978231 g46236 i0 76.7 3.94160583941606 90 21 98.5 0 3 272 485 574 NOT46734.1 glycogen debranching protein [Acidobacteriota bacterium] diamond 1080 147 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
7796666 7796666 PRJEB83711_P_NODE_52367_length_262_cov_1.650794_g52101_i0 PRJEB83711 52367 262 1.650794 4.32508028 Terriglobales bacterium 2282142 Bacteria Bacteria 159 4.03e-48   NR HVO93687.1 2282142 g52101 i0 89.7 0.99618320610687 87 9 99.6 0 262 2 16 102 HVO93687.1 VOC family protein [Terriglobales bacterium] diamond 261 159 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales     Terriglobales bacterium
12898186 12898186 PRJEB83711_P_NODE_69391_length_247_cov_0.896552_g69125_i0 PRJEB83711 69391 247 0.896552 2.21448344 Luteitalea sp. TBR-22 2802971 Bacteria Bacteria 396 8.95e-106   NTclustered gi|2131947417|dbj|AP024452.2| 2802971 g69125 i0 95.902 0.987854251012146 244 10 99 0 4 247 1948328 1948085 Vicinamibacteria bacterium TBR-22 DNA, complete genome blastn 244 396 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea sp. TBR-22
22675569 22675569 PRJEB83711_P_NODE_47898_length_271_cov_1.550505_g47632_i0 PRJEB83711 47898 271 1.550505 4.20186855 Bacteria 2 Bacteria Bacteria 158 4.6e-44   NR MCC6989722.1 1978231 g47632 i0 80 5.97785977859779 90 18 99.6 0 271 2 279 368 MCC6989722.1 apolipoprotein N-acyltransferase [Acidobacteriota bacterium] diamond 1620 159 0.993710691823899 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
23096537 23096537 PRJEB83711_P_NODE_63059_length_250_cov_0.881356_g62793_i0 PRJEB83711 63059 250 0.881356 2.20339 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 191 4.6e-44   NTclustered gi|2874254091|emb|OY970174.1| 171953 g62793 i0 81.513 1.756 238 39 94 5 15 249 3484586 3484821 MAG: uncultured Acidobacteriota bacterium isolate MFD01275.bin.c.18 genome assembly, chromosome: 1 blastn 439 191 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
24370394 24370394 PRJEB83711_P_NODE_67520_length_248_cov_0.891429_g67254_i0 PRJEB83711 67520 248 0.891429 2.21074392 Candidatus Acidiferrales bacterium 2952895 Bacteria Bacteria 94.4 5.44e-23   NR HXF07293.1 2952895 g67254 i0 79.7 0.774193548387097 64 11 77.4 1 247 56 41 102 HXF07293.1 chaperone modulator CbpM [Candidatus Acidiferrales bacterium] diamond 192 94.4 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales     Candidatus Acidiferrales bacterium
24370523 24370523 PRJEB83711_P_NODE_73500_length_245_cov_0.906977_g73234_i0 PRJEB83711 73500 245 0.906977 2.22209365 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 135 2.13e-27   NTclustered gi|2874253959|emb|OY970284.1| 2651171 g73234 i0 83.673 0.6 147 20 59 3 76 220 1172507 1172363 MAG: Thermoanaerobaculia bacterium isolate MFD05513.bin.1.42 genome assembly, chromosome: 1 blastn 147 135 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
26654184 26654184 PRJEB83711_P_NODE_58741_length_253_cov_0.866667_g58475_i0 PRJEB83711 58741 253 0.866667 2.19266751 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 144 2.79e-39   NR HQU85722.1 2283092 g58475 i0 82.1 1.96837944664032 84 15 99.6 0 253 2 37 120 HQU85722.1 hypothetical protein [Pyrinomonadaceae bacterium] diamond 498 144 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
26781275 26781275 PRJEB83711_P_NODE_75681_length_243_cov_2.270588_g75415_i0 PRJEB83711 75681 243 2.270588 5.51752884 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 59.7 3.62e-8   NR HEX8370374.1 2283092 g75415 i0 63.6 1.07407407407407 44 16 54.3 0 132 1 5 48 HEX8370374.1 glycosyltransferase family 2 protein [Pyrinomonadaceae bacterium] diamond 261 59.7 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
27002492 27002492 PRJEB83711_P_NODE_78222_length_242_cov_0.923077_g77956_i0 PRJEB83711 78222 242 0.923077 2.23384634 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 79.7 1.01e-15   NR HEY2292763.1 2651171 g77956 i0 74.1 0.71900826446281 58 15 71.9 0 1 174 215 272 HEY2292763.1 ATP-binding protein [Thermoanaerobaculia bacterium] diamond 174 79.7 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
27508489 27508489 PRJEB83711_P_NODE_48003_length_271_cov_1.262626_g47737_i0 PRJEB83711 48003 271 1.262626 3.42171646 Edaphobacter modestus 388466 Bacteria Bacteria 158 1.14e-44   NR WP_130419215.1 388466 g47737 i0 87.8 0.996309963099631 90 11 99.6 0 271 2 12 101 WP_130419215.1 efflux RND transporter periplasmic adaptor subunit [Edaphobacter modestus] diamond 270 158 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Edaphobacter Edaphobacter modestus
27918710 27918710 PRJEB83711_P_NODE_67805_length_248_cov_0.880000_g67539_i0 PRJEB83711 67805 248 0.88 2.1824 Acidobacteriota bacterium 1978231 Bacteria Bacteria 153 6.8699999999999996e-46   NR MDT7604728.1 1978231 g67539 i0 82.9 2.9758064516129 82 14 99.2 0 246 1 49 130 MDT7604728.1 REP-associated tyrosine transposase [Acidobacteriota bacterium] diamond 738 153 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27950406 27950406 PRJEB83711_P_NODE_63925_length_250_cov_0.881356_g63659_i0 PRJEB83711 63925 250 0.881356 2.20339 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 134 5.79e-37   NR HYP06827.1 2212468 g63659 i0 84 1.956 81 13 97.2 0 6 248 82 162 HYP06827.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB [Bryobacteraceae bacterium] diamond 489 134 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
28424106 28424106 PRJEB83711_P_NODE_65286_length_249_cov_0.886364_g65020_i0 PRJEB83711 65286 249 0.886364 2.20704636 Acidobacteriota bacterium 1978231 Bacteria Bacteria 89 2.19e-18   NR MCC7181818.1 1978231 g65020 i0 83.7 0.590361445783133 49 8 59 0 1 147 43 91 MCC7181818.1 winged helix-turn-helix domain-containing protein [Acidobacteriota bacterium] diamond 147 89 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28518801 28518801 PRJEB83711_P_NODE_58987_length_252_cov_1.743017_g58721_i0 PRJEB83711 58987 252 1.743017 4.39240284 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 135 7.789999999999998e-35   NR HEV8347416.1 2910147 g58721 i0 73.5 6.94047619047619 83 22 98.8 0 4 252 885 967 HEV8347416.1 TonB-dependent receptor [Vicinamibacterales bacterium] diamond 1749 135 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
28676690 28676690 PRJEB83711_P_NODE_54787_length_258_cov_1.091892_g54521_i0 PRJEB83711 54787 258 1.091892 2.81708136 Acidobacteriota bacterium 1978231 Bacteria Bacteria 42 0.0159   NR PYU21402.1 1978231 g54521 i0 51.4 0.430232558139535 37 17 43 1 79 189 44 79 PYU21402.1 MAG: hypothetical protein DMG30_17720 [Acidobacteriota bacterium] diamond 111 42 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
29244920 29244920 PRJEB83711_P_NODE_65929_length_249_cov_0.886364_g65663_i0 PRJEB83711 65929 249 0.886364 2.20704636 Acidobacteriota bacterium 1978231 Bacteria Bacteria 94.7 2.01e-20   NR MBA2354093.1 1978231 g65663 i0 58.5 0.987951807228916 82 34 98.8 0 248 3 107 188 MBA2354093.1 AAA family ATPase [Acidobacteriota bacterium] diamond 246 94.7 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
29623275 29623275 PRJEB83711_P_NODE_57710_length_253_cov_0.866667_g57444_i0 PRJEB83711 57710 253 0.866667 2.19266751 Blastocatellia bacterium 2052146 Bacteria Bacteria 167 1.5799999999999998e-46   NR HMV46138.1 2052146 g57444 i0 91.7 1.99209486166008 84 7 99.6 0 252 1 355 438 HMV46138.1 PA14 domain-containing protein [Blastocatellia bacterium] diamond 504 167 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
30128802 30128802 PRJEB83711_P_NODE_72552_length_245_cov_0.906977_g72286_i0 PRJEB83711 72552 245 0.906977 2.22209365 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 152 1.59e-41   NR HQU91869.1 2283092 g72286 i0 92.6 0.991836734693878 81 6 99.2 0 2 244 32 112 HQU91869.1 L-glutamate gamma-semialdehyde dehydrogenase [Pyrinomonadaceae bacterium] diamond 243 152 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
30223834 30223834 PRJEB83711_P_NODE_43052_length_282_cov_0.669856_g42786_i0 PRJEB83711 43052 282 0.669856 1.88899392 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 45.8 0.00482   NR MBC7909225.1 2283092 g42786 i0 37 1.71276595744681 81 50 85.1 1 41 280 270 350 MBC7909225.1 hydantoinase/oxoprolinase family protein [Pyrinomonadaceae bacterium] diamond 483 45.8 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
30319262 30319262 PRJEB83711_P_NODE_71492_length_246_cov_0.901734_g71226_i0 PRJEB83711 71492 246 0.901734 2.21826564 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 89.7 1.17e-18   NR HKR62676.1 2651171 g71226 i0 60.2 14.1707317073171 83 26 100 2 246 1 631 707 HKR62676.1 PAS domain S-box protein [Thermoanaerobaculia bacterium] diamond 3486 89.7 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
30343470 30343470 PRJEB83711_P_NODE_74892_length_244_cov_0.912281_g74626_i0 PRJEB83711 74892 244 0.912281 2.22596564 Bacteria 2 Bacteria Bacteria 85.5 3.36e-17   NR HRS37394.1 2651171 g74626 i0 60.6 3.33196721311475 66 25 79.9 1 195 1 23 88 HRS37394.1 hypothetical protein [Thermoanaerobaculia bacterium] diamond 813 86.3 0.990730011587486 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
30382325 30382325 PRJEB83711_P_NODE_74793_length_244_cov_0.912281_g74527_i0 PRJEB83711 74793 244 0.912281 2.22596564 Acidobacteriota bacterium 1978231 Bacteria Bacteria 121 7.36e-33   NR MDQ3800714.1 1978231 g74527 i0 82.7 0.995901639344262 81 13 99.6 1 1 243 61 140 MDQ3800714.1 ribosome-associated translation inhibitor RaiA [Acidobacteriota bacterium] diamond 243 121 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30413779 30413779 PRJEB83711_P_NODE_70573_length_246_cov_0.901734_g70307_i0 PRJEB83711 70573 246 0.901734 2.21826564 Acidobacteriaceae bacterium 2052142 Bacteria Bacteria 120 1.23e-31   NR HVC89691.1 2052142 g70307 i0 67.4 1.04878048780488 86 23 98.8 1 3 245 64 149 HVC89691.1 replication-relaxation family protein [Acidobacteriaceae bacterium] diamond 258 120 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   Acidobacteriaceae bacterium
30508302 30508302 PRJEB83711_P_NODE_75493_length_244_cov_0.900585_g75227_i0 PRJEB83711 75493 244 0.900585 2.1974274 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 136 7.93e-36   NR HLJ14224.1 2212468 g75227 i0 76.5 0.995901639344262 81 19 99.6 0 244 2 301 381 HLJ14224.1 arylsulfatase [Bryobacteraceae bacterium] diamond 243 136 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
30729430 30729430 PRJEB83711_P_NODE_76634_length_243_cov_0.917647_g76368_i0 PRJEB83711 76634 243 0.917647 2.22988221 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 85.9 2.51e-17   NR HKE22330.1 2212468 g76368 i0 46.3 0.987654320987654 80 43 98.8 0 4 243 682 761 HKE22330.1 PD-(D/E)XK nuclease family protein [Bryobacteraceae bacterium] diamond 240 85.9 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
30824200 30824200 PRJEB83711_P_NODE_39234_length_291_cov_1.284404_g38968_i0 PRJEB83711 39234 291 1.284404 3.73761564 Candidatus Acidiferrales bacterium 2952895 Bacteria Bacteria 43.1 0.0429   NR HLQ61047.1 2952895 g38968 i0 47.4 0.587628865979381 57 27 55.7 1 166 5 186 242 HLQ61047.1 cytochrome c biogenesis protein CcdA [Candidatus Acidiferrales bacterium] diamond 171 43.1 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales     Candidatus Acidiferrales bacterium
30855786 30855786 PRJEB83711_P_NODE_64314_length_249_cov_2.034091_g64048_i0 PRJEB83711 64314 249 2.034091 5.06488659 Acidobacteriota bacterium 1978231 Bacteria Bacteria 124 6.47e-31   NR MDQ3041537.1 1978231 g64048 i0 70.4 0.975903614457831 81 24 97.6 0 245 3 229 309 MDQ3041537.1 Fe3+-dicitrate receptor [Acidobacteriota bacterium] diamond 243 124 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31298214 31298214 PRJEB83711_P_NODE_43235_length_281_cov_1.500000_g42969_i0 PRJEB83711 43235 281 1.5 4.215 Blastocatellia bacterium 2052146 Bacteria Bacteria 166 1.92e-50   NR HQR40749.1 2052146 g42969 i0 78.5 0.99288256227758 93 20 99.3 0 3 281 68 160 HQR40749.1 ribonuclease H-like domain-containing protein [Blastocatellia bacterium] diamond 279 166 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
31424743 31424743 PRJEB83711_P_NODE_82036_length_227_cov_2.480519_g81770_i0 PRJEB83711 82036 227 2.480519 5.63077813 Acidobacteriota bacterium 1978231 Bacteria Bacteria 120 1.34e-29   NR MBA3885723.1 1978231 g81770 i0 80 0.991189427312775 75 15 99.1 0 1 225 791 865 MBA3885723.1 efflux RND transporter permease subunit [Acidobacteriota bacterium] diamond 225 120 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31772643 31772643 PRJEB83711_P_NODE_68977_length_247_cov_0.896552_g68711_i0 PRJEB83711 68977 247 0.896552 2.21448344 Blastocatellia bacterium 2052146 Bacteria Bacteria 168 3.75e-51   NR HWP45185.1 2052146 g68711 i0 90.2 1.97975708502024 82 8 99.6 0 246 1 75 156 HWP45185.1 cysteine dioxygenase family protein [Blastocatellia bacterium] diamond 489 168 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
32247634 32247634 PRJEB83711_P_NODE_58518_length_253_cov_0.866667_g58252_i0 PRJEB83711 58518 253 0.866667 2.19266751 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 156 6.859999999999999e-45   NR HVL68216.1 2910147 g58252 i0 92.9 4.9802371541502 84 6 99.6 0 1 252 33 116 HVL68216.1 threonine/serine dehydratase [Vicinamibacterales bacterium] diamond 1260 156 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
32783985 32783985 PRJEB83711_P_NODE_79440_length_242_cov_0.923077_g79174_i0 PRJEB83711 79440 242 0.923077 2.23384634 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 113 1.11e-27   NR HTA68732.1 2212468 g79174 i0 70 0.991735537190083 80 24 99.2 0 2 241 287 366 HTA68732.1 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family protein [Bryobacteraceae bacterium] diamond 240 113 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;