RNAquarium Metadata Server
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contig_metadata

13 rows where bioproject = "PRJEB83711", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 13 ✖

tax_kingdom 1

  • Pseudomonadati · 13 ✖

bioproject 1

  • PRJEB83711 · 13 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2694905 2694905 PRJEB83711_P_NODE_76383_length_243_cov_0.917647_g76117_i0 PRJEB83711 76383 243 0.917647 2.22988221 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 411 3.14e-110   NTclustered gi|469926873|gb|CP003538.1| 349215 g76117 i0 97.119 1 243 7 100 0 1 243 2436618 2436860 Micavibrio aeruginosavorus EPB, complete genome blastn 243 411 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
17576429 17576429 PRJEB83711_P_NODE_34354_length_308_cov_1.302128_g34088_i0 PRJEB83711 34354 308 1.302128 4.01055424 Micavibrio 213485 Bacteria Bacteria 569 6.419999999999998e-158   NTclustered gi|469926873|gb|CP003538.1| 349215 g34088 i0 100 184.324675324675 308 0 100 0 1 308 463267 462960 Micavibrio aeruginosavorus EPB, complete genome blastn 56772 569 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
26844716 26844716 PRJEB83711_P_NODE_75401_length_244_cov_0.912281_g75135_i0 PRJEB83711 75401 244 0.912281 2.22596564 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 108 2.62e-25   NR MBX3020618.1 2053517 g75135 i0 69.1 1.99180327868852 81 25 99.6 0 243 1 186 266 MBX3020618.1 Flp pilus assembly complex ATPase component TadA [Bdellovibrionales bacterium] diamond 486 108 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
26907771 26907771 PRJEB83711_P_NODE_75382_length_244_cov_0.912281_g75116_i0 PRJEB83711 75382 244 0.912281 2.22596564 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 120 2.0299999999999997e-31   NR MEZ0391573.1 2026715 g75116 i0 69.1 0.995901639344262 81 25 99.6 0 244 2 158 238 MEZ0391573.1 TIGR02147 family protein [Pseudobdellovibrionaceae bacterium] diamond 243 120 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
27729698 27729698 PRJEB83711_P_NODE_73464_length_245_cov_0.906977_g73198_i0 PRJEB83711 73464 245 0.906977 2.22209365 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 157 7.0399999999999996e-43   NR MCK6596123.1 2081706 g73198 i0 95.1 0.991836734693878 81 4 99.2 0 2 244 492 572 MCK6596123.1 phenylalanine--tRNA ligase subunit beta [Bacteriovoracaceae bacterium] diamond 243 157 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
28897459 28897459 PRJEB83711_P_NODE_58408_length_253_cov_0.866667_g58142_i0 PRJEB83711 58408 253 0.866667 2.19266751 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 135 7.59e-38   NR HMN69291.1 2053517 g58142 i0 73.5 0.984189723320158 83 22 98.4 0 249 1 12 94 HMN69291.1 hypothetical protein [Bdellovibrionales bacterium] diamond 249 135 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29465526 29465526 PRJEB83711_P_NODE_78830_length_242_cov_0.923077_g78564_i0 PRJEB83711 78830 242 0.923077 2.23384634 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 74.7 2.23e-15   NR HMN69307.1 2053517 g78564 i0 68.6 0.632231404958678 51 16 63.2 0 1 153 28 78 HMN69307.1 hypothetical protein [Bdellovibrionales bacterium] diamond 153 74.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30160498 30160498 PRJEB83711_P_NODE_56412_length_255_cov_1.225275_g56146_i0 PRJEB83711 56412 255 1.225275 3.12445125 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 134 1.4699999999999998e-35   NR MEK7690162.1 3034175 g56146 i0 79.5 0.976470588235294 83 17 97.6 0 4 252 63 145 MEK7690162.1 IS256 family transposase [Bdellovibrionota bacterium] diamond 249 134 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
30697754 30697754 PRJEB83711_P_NODE_65874_length_249_cov_0.886364_g65608_i0 PRJEB83711 65874 249 0.886364 2.20704636 Peredibacter starrii 28202 Bacteria Bacteria 141 1.6999999999999996e-38   NR WP_321395964.1 28202 g65608 i0 79.3 0.987951807228916 82 17 98.8 0 248 3 160 241 WP_321395964.1 hypothetical protein [Peredibacter starrii] diamond 246 141 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
30855787 30855787 PRJEB83711_P_NODE_67374_length_248_cov_0.891429_g67108_i0 PRJEB83711 67374 248 0.891429 2.21074392 Pseudobdellovibrio sp. 2862747 Bacteria Bacteria 67.8 1.62e-12   NR MCM2354349.1 2862747 g67108 i0 43.5 0.834677419354839 69 39 83.5 0 38 244 30 98 MCM2354349.1 hypothetical protein [Pseudobdellovibrio sp.] diamond 207 67.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp.
31899259 31899259 PRJEB83711_P_NODE_67777_length_248_cov_0.891429_g67511_i0 PRJEB83711 67777 248 0.891429 2.21074392 Peredibacter starrii 28202 Bacteria Bacteria 149 4.68e-41   NR WP_321397159.1 28202 g67511 i0 86.6 2.9758064516129 82 11 99.2 0 3 248 48 129 WP_321397159.1 UDP-glucose/GDP-mannose dehydrogenase family protein [Peredibacter starrii] diamond 738 149 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
31899261 31899261 PRJEB83711_P_NODE_72377_length_245_cov_0.906977_g72111_i0 PRJEB83711 72377 245 0.906977 2.22209365 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 99 4.98e-22   NR MES2527245.1 3034175 g72111 i0 81.3 0.783673469387755 64 12 78.4 0 52 243 2 65 MES2527245.1 SulP family inorganic anion transporter [Bdellovibrionota bacterium] diamond 192 99 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
32120868 32120868 PRJEB83711_P_NODE_48498_length_270_cov_1.304569_g48232_i0 PRJEB83711 48498 270 1.304569 3.5223363 Pseudobdellovibrio sp. HCB154 3386277 Bacteria Bacteria 108 3.77e-25   NR WP_409478937.1 3386277 g48232 i0 58 0.977777777777778 88 37 97.8 0 7 270 184 271 WP_409478937.1 response regulator [Pseudobdellovibrio sp. HCB154] diamond 264 108 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp. HCB154

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;