RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

21 rows where bioproject = "PRJEB83711" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 21 ✖

bioproject 1

  • PRJEB83711 · 21 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3970590 3970590 PRJEB83711_P_NODE_60064_length_252_cov_0.871508_g59798_i0 PRJEB83711 60064 252 0.871508 2.19620016 Methanobacterium sp. BRmetb2 2025350 Archaea Archaea 139 1.71e-28   NTclustered gi|1473087786|gb|CP022705.1| 2025350 g59798 i0 78.355 538.813492063492 231 39 98 11 18 242 478214 478439 MAG: Methanobacterium sp. BRmetb2 chromosome, complete genome blastn 135781 139 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. BRmetb2
6522289 6522289 PRJEB83711_P_NODE_43366_length_281_cov_1.250000_g43100_i0 PRJEB83711 43366 281 1.25 3.5125 Methanosarcina sp. Kolksee 1434099 Archaea Archaea 503 5.95e-138   NTclustered gi|805394978|gb|CP009524.1| 1434099 g43100 i0 98.932 6 281 3 100 0 1 281 443473 443753 Methanosarcina sp. Kolksee, complete genome blastn 1686 503 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp. Kolksee
6522841 6522841 PRJEB83711_P_NODE_67646_length_248_cov_0.891429_g67380_i0 PRJEB83711 67646 248 0.891429 2.21074392 Halococcus dombrowskii 179637 Archaea Archaea 385 1.95e-102   NTclustered gi|2221489803|gb|CP095005.1| 179637 g67380 i0 94.737 1.99193548387097 247 13 99 0 1 247 469881 470127 Halococcus dombrowskii strain H4 chromosome, complete genome blastn 494 385 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus dombrowskii
11622789 11622789 PRJEB83711_P_NODE_52530_length_262_cov_1.386243_g52264_i0 PRJEB83711 52530 262 1.386243 3.63195666 Methanosarcina vacuolata 2215 Archaea Archaea 444 3.38e-120   NTclustered gi|805391208|gb|CP009520.1| 1434123 g52264 i0 97.328 7.08778625954198 262 6 100 1 1 262 1155291 1155551 Methanosarcina vacuolata Z-761, complete genome blastn 1857 444 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina vacuolata
16721593 16721593 PRJEB83711_P_NODE_78794_length_242_cov_0.923077_g78528_i0 PRJEB83711 78794 242 0.923077 2.23384634 Methanosarcina barkeri 2208 Archaea Archaea 387 5.26e-103   NTclustered gi|805398754|gb|CP009526.1| 1434109 g78528 i0 95.455 4 242 11 100 0 1 242 4141494 4141253 Methanosarcina barkeri str. Wiesmoor, complete genome blastn 968 387 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina barkeri
17996540 17996540 PRJEB83711_P_NODE_82515_length_215_cov_9.070423_g82249_i0 PRJEB83711 82515 215 9.070423 19.50140945 Methanosalsum zhilinae 39669 Archaea Archaea 56.5 0.001   NTclustered gi|335929340|gb|CP002101.1| 679901 g82249 i0 100 0.13953488372093 30 0 14 0 47 76 1665167 1665138 Methanosalsum zhilinae DSM 4017, complete genome blastn 30 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosalsum Methanosalsum zhilinae
21821439 21821439 PRJEB83711_P_NODE_72138_length_245_cov_1.279070_g71872_i0 PRJEB83711 72138 245 1.27907 3.1337215 Methanobacterium formicicum 2162 Archaea Archaea 442 1.1199999999999994e-119   NTclustered gi|952971377|emb|LN734822.1| 2162 g71872 i0 99.184 5 245 2 100 0 1 245 122266 122022 Methanobacterium formicicum genome assembly isolate Mb9, chromosome : I blastn 1225 442 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
24370536 24370536 PRJEB83711_P_NODE_73980_length_244_cov_1.473684_g73714_i0 PRJEB83711 73980 244 1.473684 3.59578896 Salinigranum rubrum 755307 Archaea Archaea 309 1.1800000000000002e-79   NTclustered gi|1336549475|gb|CP026309.1| 755307 g73714 i0 89.958 32.6188524590164 239 24 98 0 3 241 1737454 1737692 Salinigranum rubrum strain GX10 chromosome, complete genome blastn 7959 309 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Salinigranum Salinigranum rubrum
24370543 24370543 PRJEB83711_P_NODE_74300_length_244_cov_0.912281_g74034_i0 PRJEB83711 74300 244 0.912281 2.22596564 Natronorubrum daqingense 588898 Archaea Archaea 390 4.11e-104   NTclustered gi|1134979927|gb|CP019327.1| 588898 g74034 i0 95.492 2.12704918032787 244 11 100 0 1 244 2319454 2319211 Natronorubrum daqingense strain JX313, complete sequence blastn 519 390 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronorubrum Natronorubrum daqingense
26907770 26907770 PRJEB83711_P_NODE_68222_length_247_cov_1.522989_g67956_i0 PRJEB83711 68222 247 1.522989 3.76178283 Natronoarchaeum rubrum 755311 Archaea Archaea 43.5 0.0197   NR WP_256391750.1 755311 g67956 i0 37.5 0.97165991902834 80 39 88.7 3 18 236 59 134 WP_256391750.1 ATP-binding protein [Natronoarchaeum rubrum] diamond 240 43.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronoarchaeaceae Natronoarchaeum Natronoarchaeum rubrum
27097493 27097493 PRJEB83711_P_NODE_62062_length_251_cov_0.876404_g61796_i0 PRJEB83711 62062 251 0.876404 2.19977404 Methanobrevibacter sp. 66852 Archaea Archaea 87.8 1.68e-19   NR MBO7212442.1 66852 g61796 i0 67.3 0.621513944223108 52 17 62.2 0 1 156 130 181 MBO7212442.1 hypothetical protein [Methanobrevibacter sp.] diamond 156 87.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
27184862 27184862 PRJEB83711_P_NODE_66862_length_248_cov_0.891429_g66596_i0 PRJEB83711 66862 248 0.891429 2.21074392 Methanobrevibacter 2172 Archaea Archaea 154 1.33e-42   NR WP_330027063.1 66852 g66596 i0 85.2 1.95967741935484 81 12 98 0 248 6 305 385 WP_330027063.1 glutamate--tRNA ligase, partial [Methanobrevibacter sp.] diamond 486 154 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
27382129 27382129 PRJEB83711_P_NODE_54163_length_259_cov_1.322581_g53897_i0 PRJEB83711 54163 259 1.322581 3.42548479 Methanobrevibacter sp. 66852 Archaea Archaea 108 4.45e-27   NR WP_330009041.1 66852 g53897 i0 54.7 0.996138996138996 86 39 99.6 0 259 2 81 166 WP_330009041.1 AraC family transcriptional regulator [Methanobrevibacter sp.] diamond 258 108 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
27634733 27634733 PRJEB83711_P_NODE_42004_length_284_cov_1.473934_g41738_i0 PRJEB83711 42004 284 1.473934 4.18597256 Halococcus dombrowskii 179637 Archaea Archaea 155 2.16e-41   NR WP_244706568.1 179637 g41738 i0 76.6 0.992957746478873 94 22 99.3 0 282 1 1231 1324 WP_244706568.1 hypothetical protein [Halococcus dombrowskii] diamond 282 155 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus dombrowskii
27950413 27950413 PRJEB83711_P_NODE_77085_length_243_cov_0.917647_g76819_i0 PRJEB83711 77085 243 0.917647 2.22988221 Halosimplex carlsbadense 171164 Archaea Archaea 94.4 9.62e-21   NR WP_006881789.1 171164 g76819 i0 58 2 81 34 100 0 1 243 88 168 WP_006881789.1 aminopeptidase [Halosimplex carlsbadense] diamond 486 94.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halosimplex Halosimplex carlsbadense
27981980 27981980 PRJEB83711_P_NODE_71465_length_246_cov_0.901734_g71199_i0 PRJEB83711 71465 246 0.901734 2.21826564 Methanobrevibacter sp. UBA412 1915486 Archaea Archaea 129 6.030000000000001e-36   NR WP_413829086.1 1915486 g71199 i0 70.4 1.97560975609756 81 24 98.8 0 1 243 41 121 WP_413829086.1 response regulator [Methanobrevibacter sp. UBA412] diamond 486 129 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. UBA412
29908138 29908138 PRJEB83711_P_NODE_44631_length_278_cov_1.502439_g44365_i0 PRJEB83711 44631 278 1.502439 4.17678042 Natronomonas sp. LN261 2750669 Archaea Archaea 116 1.6699999999999999e-31   NR WP_181693274.1 2750669 g44365 i0 94.9 0.636690647482014 59 3 63.7 0 2 178 55 113 WP_181693274.1 hypothetical protein [Natronomonas sp. LN261] diamond 177 116 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas sp. LN261
31646027 31646027 PRJEB83711_P_NODE_58597_length_253_cov_0.866667_g58331_i0 PRJEB83711 58597 253 0.866667 2.19266751 Methanobrevibacter sp. 66852 Archaea Archaea 132 3.4199999999999992e-34   NR MBO7212323.1 66852 g58331 i0 64.4 1.06719367588933 90 25 98.4 1 251 3 402 491 MBO7212323.1 peptidoglycan-binding protein [Methanobrevibacter sp.] diamond 270 132 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
31899266 31899266 PRJEB83711_P_NODE_78197_length_242_cov_0.988166_g77931_i0 PRJEB83711 78197 242 0.988166 2.39136172 Thermoplasmata archaeon 1906666 Archaea Archaea 42.7 0.0275   NR MDH4123785.1 1906666 g77931 i0 40.5 0.45867768595041303 37 22 45.9 0 187 77 46 82 MDH4123785.1 phosphoesterase [Thermoplasmata archaeon] diamond 111 42.7 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
32342465 32342465 PRJEB83711_P_NODE_60119_length_252_cov_0.871508_g59853_i0 PRJEB83711 60119 252 0.871508 2.19620016 Methanobrevibacter sp. 66852 Archaea Archaea 151 8.459999999999998e-42   NR MBR2558764.1 66852 g59853 i0 92.8 1.97619047619048 83 6 98.8 0 2 250 260 342 MBR2558764.1 lysine--tRNA ligase [Methanobrevibacter sp.] diamond 498 151 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
32595300 32595300 PRJEB83711_P_NODE_76840_length_243_cov_0.917647_g76574_i0 PRJEB83711 76840 243 0.917647 2.22988221 Methanosarcina sp. UBA5 1915593 Archaea Archaea 48.9 5.57e-5   NR WP_292387852.1 1915593 g76574 i0 88 0.308641975308642 25 3 30.9 0 87 161 98 122 WP_292387852.1 DDE-type integrase/transposase/recombinase, partial [Methanosarcina sp. UBA5] diamond 75 48.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp. UBA5

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;