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contig_metadata

6 rows where bioproject = "PRJEB83711", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 6 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 6 ✖

bioproject 1

  • PRJEB83711 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4826650 4826650 PRJEB83711_P_NODE_35424_length_303_cov_8.682609_g35158_i0 PRJEB83711 35424 303 8.682609 26.30830527 Plagiorchiida 27871 Platyhelminthes Platyhelminthes 549 8.209999999999997e-152   NTclustered gi|1799639270|gb|MN970007.1| 6192 g35158 i0 99.34 100.554455445545 303 2 100 0 1 303 5323 5021 Fasciola hepatica isolate Geelong small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and non-transcribed intergenic spacer, partial sequence blastn 30468 549 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Fasciolidae Fasciola Fasciola hepatica
10346958 10346958 PRJEB83711_P_NODE_39769_length_289_cov_11.787037_g39503_i0 PRJEB83711 39769 289 11.787037 34.06453693 Isthmiophora hortensis 292498 Platyhelminthes Platyhelminthes 518 2.19e-142   NTclustered gi|52000522|dbj|AB189982.1| 292498 g39503 i0 98.962 100.757785467128 289 3 100 0 1 289 6022 6310 Isthmiophora hortensis genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence blastn 29119 518 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Echinostomatidae Isthmiophora Isthmiophora hortensis
11201865 11201865 PRJEB83711_P_NODE_37149_length_297_cov_2.272321_g36883_i0 PRJEB83711 37149 297 2.272321 6.74879337 Plagiorchiida 27871 Platyhelminthes Platyhelminthes 171 7.299999999999999e-38   NTclustered gi|1907754960|gb|MT862417.1| 6192 g36883 i0 77.558 9.02693602693603 303 54 98 11 5 296 6504 6803 Fasciola hepatica isolate DM402 mitochondrion, partial genome blastn 2681 171 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Fasciolidae Fasciola Fasciola hepatica
13752226 13752226 PRJEB83711_P_NODE_55931_length_255_cov_38.043956_g55665_i0 PRJEB83711 55931 255 38.043956 97.0120878 Fasciola 6191 Platyhelminthes Platyhelminthes 361 3.3899999999999996e-95   NTclustered gi|1799639270|gb|MN970007.1| 6192 g55665 i0 92.829 37.0588235294118 251 15 97 3 1 248 6795 7045 Fasciola hepatica isolate Geelong small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and non-transcribed intergenic spacer, partial sequence blastn 9450 361 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Fasciolidae Fasciola Fasciola hepatica
22675783 22675783 PRJEB83711_P_NODE_73598_length_244_cov_18.309942_g73332_i0 PRJEB83711 73598 244 18.309942 44.67625848 Petasiger 235441 Platyhelminthes Platyhelminthes 444 3.11e-120   NTclustered gi|1209055173|gb|KY284002.1| 1607861 g73332 i0 99.588 99.594262295082 243 1 99 0 1 243 898 1140 Petasiger sp. GC-2015 isolate PH1 28S ribosomal RNA gene, partial sequence blastn 24301 444 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Echinostomatidae Petasiger Petasiger sp. GC-2015
23096233 23096233 PRJEB83711_P_NODE_49139_length_268_cov_9.194872_g48873_i0 PRJEB83711 49139 268 9.194872 24.64225696 Isthmiophora hortensis 292498 Platyhelminthes Platyhelminthes 466 7.39e-127   NTclustered gi|52000522|dbj|AB189982.1| 292498 g48873 i0 98.134 101.373134328358 268 3 99 2 2 268 5754 5488 Isthmiophora hortensis genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence blastn 27168 466 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Echinostomatidae Isthmiophora Isthmiophora hortensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;