RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB83101", tax_phylum = "Cossaviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

  • Cossaviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB83101 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20543362 20543362 PRJEB83101_P_NODE_58057_length_263_cov_1.378947_g57752_i0 PRJEB83101 58057 263 1.378947 3.62663061 Gammapapillomavirus 7 1175849 Viruses Viruses 302 2.16e-77   NTclustered gi|225927560|ref|NC_012485.1| 915426 g57752 i0 98.817 1 169 2 100 0 1 169 7178 7346 Human papillomavirus type 109, complete genome blastn 263 302 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 7
20543682 20543682 PRJEB83101_P_NODE_70297_length_250_cov_1.152542_g69992_i0 PRJEB83101 70297 250 1.152542 2.881355 Gammapapillomavirus 3 333929 Viruses Viruses 451 1.91e-122   NTclustered gi|1653972953|gb|MK620836.1| 1851213 g69992 i0 99.2 4 250 2 100 0 1 250 6095 5846 Human papillomavirus type 188 strain HPV188/S31-CNI/CO/2018 E6 gene, partial cds; and E1, E2, L2, and L1 genes, complete cds blastn 1000 451 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;