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contig_metadata

16 rows where bioproject = "PRJEB83101", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 16 ✖

tax_kingdom 1

  • Pseudomonadati · 16 ✖

bioproject 1

  • PRJEB83101 · 16 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12895495 12895495 PRJEB83101_P_NODE_42371_length_290_cov_1.331797_g42066_i0 PRJEB83101 42371 290 1.331797 3.8622113 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 162 8.74e-44   NR MFN8846768.1 2053517 g42066 i0 83.3 0.993103448275862 96 16 99.3 0 290 3 834 929 MFN8846768.1 DNA-directed RNA polymerase subunit beta' [Bdellovibrionales bacterium] diamond 288 162 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
23095044 23095044 PRJEB83101_P_NODE_82319_length_244_cov_0.912281_g82014_i0 PRJEB83101 82319 244 0.912281 2.22596564 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 401 1.8999999999999998e-107   NTclustered gi|469926873|gb|CP003538.1| 349215 g82014 i0 96.311 13.8975409836066 244 9 100 0 1 244 375146 375389 Micavibrio aeruginosavorus EPB, complete genome blastn 3391 401 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
26710097 26710097 PRJEB83101_P_NODE_89541_length_231_cov_2.278481_g89236_i0 PRJEB83101 89541 231 2.278481 5.26329111 Micavibrio 213485 Bacteria Bacteria 105 2.45e-26   NR WP_015468097.1 349221 g89236 i0 82.5 2.22077922077922 57 10 74 0 171 1 1 57 WP_015468097.1 helix-turn-helix domain-containing protein [Micavibrio aeruginosavorus] diamond 513 105 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
26868952 26868952 PRJEB83101_P_NODE_59421_length_261_cov_1.393617_g59116_i0 PRJEB83101 59421 261 1.393617 3.63734037 Bdellovibrionota 3018035 Bacteria Bacteria 142 6.1399999999999995e-37   NR MBC7467272.1 28201 g59116 i0 83.9 16 87 14 100 0 261 1 918 1004 MBC7467272.1 efflux RND transporter permease subunit [Bdellovibrio sp.] diamond 4176 142 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
27729680 27729680 PRJEB83101_P_NODE_45104_length_285_cov_1.127358_g44799_i0 PRJEB83101 45104 285 1.127358 3.2129703 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 63.5 2.97e-9   NR PZP55814.1 349221 g44799 i0 47.3 1.17894736842105 112 41 98.9 4 282 1 122 233 PZP55814.1 MAG: hybrid sensor histidine kinase/response regulator, partial [Micavibrio aeruginosavorus] diamond 336 63.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
28100715 28100715 PRJEB83101_P_NODE_75605_length_247_cov_1.793103_g75300_i0 PRJEB83101 75605 247 1.793103 4.42896441 Bacteria 2 Bacteria Bacteria 145 9.27e-40   NR HVK61701.1 2053517 g75300 i0 90.2 1.9919028340081 82 8 99.6 0 1 246 303 384 HVK61701.1 acetyl-CoA C-acyltransferase [Bdellovibrionales bacterium] diamond 492 145 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29276311 29276311 PRJEB83101_P_NODE_60749_length_259_cov_1.317204_g60444_i0 PRJEB83101 60749 259 1.317204 3.41155836 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 53.1 3.95e-7   NR MBT7670529.1 2053517 g60444 i0 60.5 1.47104247104247 43 15 47.5 1 137 259 5 47 MBT7670529.1 hypothetical protein [Bdellovibrionales bacterium] diamond 381 53.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30090046 30090046 PRJEB83101_P_NODE_84572_length_243_cov_0.917647_g84267_i0 PRJEB83101 84572 243 0.917647 2.22988221 Bdellovibrio 958 Bacteria Bacteria 150 1.1199999999999999e-40   NR MEN0057597.1 28201 g84267 i0 83.8 1.97530864197531 80 13 98.8 0 3 242 119 198 MEN0057597.1 DEAD/DEAH box helicase [Bdellovibrio sp.] diamond 480 151 0.993377483443709 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
30097406 30097406 PRJEB83101_P_NODE_62772_length_256_cov_1.327869_g62467_i0 PRJEB83101 62772 256 1.327869 3.39934464 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 107 3.3100000000000004e-26   NR PZP56867.1 349221 g62467 i0 65.4 0.94921875 81 28 94.9 0 251 9 5 85 PZP56867.1 MAG: hypothetical protein DI586_02315 [Micavibrio aeruginosavorus] diamond 243 107 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
30406479 30406479 PRJEB83101_P_NODE_50713_length_275_cov_1.262376_g50408_i0 PRJEB83101 50713 275 1.262376 3.471534 Bacteria 2 Bacteria Bacteria 88.2 4.31e-18   NR MCM2281808.1 2026715 g50408 i0 51.3 4.37454545454545 78 38 85.1 0 275 42 279 356 MCM2281808.1 O-antigen ligase family protein [Pseudobdellovibrionaceae bacterium] diamond 1203 88.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
31202907 31202907 PRJEB83101_P_NODE_64155_length_254_cov_1.342541_g63850_i0 PRJEB83101 64155 254 1.342541 3.41005414 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 57.8 2.02e-7   NR MBS1969502.1 2053517 g63850 i0 42.2 0.980314960629921 83 40 94.5 5 253 14 220 297 MBS1969502.1 porin [Bdellovibrionales bacterium] diamond 249 57.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31519808 31519808 PRJEB83101_P_NODE_52916_length_271_cov_1.575758_g52611_i0 PRJEB83101 52916 271 1.575758 4.27030418 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 173 5.5e-51   NR MBX3023203.1 2053517 g52611 i0 88.8 0.985239852398524 89 10 98.5 0 268 2 70 158 MBX3023203.1 hypothetical protein [Bdellovibrionales bacterium] diamond 267 173 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31962465 31962465 PRJEB83101_P_NODE_64538_length_253_cov_1.788889_g64233_i0 PRJEB83101 64538 253 1.788889 4.52588917 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 135 3.1899999999999997e-37   NR HEY8280076.1 3034175 g64233 i0 79.8 0.99604743083004 84 17 99.6 0 252 1 107 190 HEY8280076.1 carboxylating nicotinate-nucleotide diphosphorylase [Bdellovibrionota bacterium] diamond 252 135 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
32057394 32057394 PRJEB83101_P_NODE_60758_length_259_cov_1.306452_g60453_i0 PRJEB83101 60758 259 1.306452 3.38371068 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 162 3.92e-44   NR MES2767986.1 3034175 g60453 i0 91.8 0.984555984555985 85 7 98.5 0 3 257 329 413 MES2767986.1 3'-5' exonuclease [Bdellovibrionota bacterium] diamond 255 162 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
32279129 32279129 PRJEB83101_P_NODE_79579_length_245_cov_1.523256_g79274_i0 PRJEB83101 79579 245 1.523256 3.7319772 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 136 5.1e-37   NR HMN68335.1 2053517 g79274 i0 86.4 0.991836734693878 81 11 99.2 0 2 244 96 176 HMN68335.1 peptidylprolyl isomerase [Bdellovibrionales bacterium] diamond 243 136 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32847021 32847021 PRJEB83101_P_NODE_77780_length_246_cov_1.427746_g77475_i0 PRJEB83101 77780 246 1.427746 3.51225516 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 159 1.5e-45   NR MCK6594806.1 2081706 g77475 i0 96.3 1 82 3 100 0 246 1 64 145 MCK6594806.1 alanine racemase [Bacteriovoracaceae bacterium] diamond 246 159 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;