RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJEB83101", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Viruses · 4 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 4 ✖

bioproject 1

  • PRJEB83101 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7794000 7794000 PRJEB83101_P_NODE_33047_length_321_cov_1.935484_g32742_i0 PRJEB83101 33047 321 1.935484 6.21290364 Bovispumavirus bostau 3427599 Viruses Viruses 566 8.699999999999998e-157   NTclustered gi|2033869785|dbj|LC622407.1| 207343 g32742 i0 98.452 80.4953271028037 323 2 100 2 1 321 439 760 Bovine foamy virus K47 proviral DNA, complete genome blastn 25839 566 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Bovispumavirus Bovispumavirus bostau
10345299 10345299 PRJEB83101_P_NODE_56649_length_265_cov_1.619792_g56344_i0 PRJEB83101 56649 265 1.619792 4.2924488 Birch leaf roll-associated virus 2057979 Viruses Viruses 148 4.5e-39   NR YP_009552737.1 2057979 g56344 i0 80.7 0.99622641509434 88 17 99.6 0 2 265 1446 1533 YP_009552737.1 polyprotein [Birch leaf roll-associated virus] diamond 264 148 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Badnavirus Badnavirus volubetulae
19267599 19267599 PRJEB83101_P_NODE_48756_length_278_cov_1.697561_g48451_i0 PRJEB83101 48756 278 1.697561 4.71921958 Gammaretrovirus murleu 3428959 Viruses Viruses 497 2.73e-136   NTclustered gi|37622930|gb|AY277737.1| 11786 g48451 i0 98.921 99.8057553956834 278 3 100 0 1 278 1977 1700 Murine leukemia virus isolate Sp496-5Sb pol protein-like gene, partial sequence; and envelope protein gene, complete cds blastn 27746 497 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
24368088 24368088 PRJEB83101_P_NODE_56500_length_265_cov_2.078125_g56195_i0 PRJEB83101 56500 265 2.078125 5.50703125 Bovispumavirus bostau 3427599 Viruses Viruses 473 4.3599999999999987e-129   NTclustered gi|2033869912|dbj|LC622424.1| 207343 g56195 i0 98.868 72.3396226415094 265 3 100 0 1 265 272 8 Bovine foamy virus G9 proviral DNA, complete genome blastn 19170 473 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Bovispumavirus Bovispumavirus bostau

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;