RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB83101" and tax_clade = "Amoebozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJEB83101 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5245291 5245291 PRJEB83101_P_NODE_68545_length_251_cov_1.162921_g68240_i0 PRJEB83101 68545 251 1.162921 2.91893171 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.023   NTclustered gi|1177288|emb|X54452.1| 44689 g68240 i0 100 0.111553784860558 28 0 11 0 3 30 1277 1250 D.discoideum culmination spiA (Dd31) gene blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
27160479 27160479 PRJEB83101_P_NODE_82422_length_244_cov_0.912281_g82117_i0 PRJEB83101 82422 244 0.912281 2.22596564 Cavenderia fasciculata 261658 Evosea other_Eukaryota 124 7.319999999999999e-31   NR XP_004366317.1 261658 g82117 i0 78.4 1.83196721311475 74 16 91 0 3 224 180 253 XP_004366317.1 adenylate cyclase domain-containing protein [Cavenderia fasciculata] diamond 447 124 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
31796793 31796793 PRJEB83101_P_NODE_83717_length_243_cov_0.917647_g83412_i0 PRJEB83101 83717 243 0.917647 2.22988221 Acytosteliaceae 2058183 Evosea other_Eukaryota 79 6.61e-15   NR XP_020438869.1 670386 g83412 i0 48.8 1.96296296296296 80 40 98.8 1 2 241 767 845 XP_020438869.1 phosphatidylinositol-4,5-diphosphate 3-kinase [Heterostelium album PN500] diamond 477 79 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;